Protein Alignment pdm3 and Pou6f1

DIOPT Version :10

• Sequence 1: NP_001188885.2
• Gene: pdm3 / 35813
• FlyBaseID: FBgn0261588
• Length: 1292
• Species: Drosophila melanogaster
• Sequence 2: XP_006520671.1
• Gene: Pou6f1 / 19009
• MGIID: 102935
• Length: 610
• Species: Mus musculus
• Alignment Length: 829
• Identity: 238/829 - (28%)
• Similarity: 316/829 - (38%)
• Gaps: 305/829 - (36%)

  Fly   494 GKSKTAKGGSSGNGSGGSSANSGTSSAQQQQQPDNPSSSSSPHHPLSASSLANVLAAATASPPPS 558
            |....|.|||.   |||....||.:.|          .|..|.|  ||.:....|.....||.|:
Mouse    45 GLESVAAGGSQ---SGGPVEASGPAEA----------GSCDPDH--SAEATVKSLPGVPPSPAPA 94

  Fly   559 L----QAPPASAQMPQLILASGQLVQGVQGAQLLIPTAQGIAVQTILTIPVSPQIPTTEQFLPNA 619
            :    |||    ..|             |.:|.|.|          |.:..:||:.|.|
Mouse    95 IATFNQAP----SQP-------------QASQTLTP----------LAVQAAPQVLTQE------ 126

  Fly   620 FGAFASYQQQQQQQQQQRDLLPPSLAALQHATALPQLAQTPTNLLKPNLFSTGVQQLLTALHPEL 684
                                   |||.:.....:|  |.|.|   :|.|...|:
Mouse   127 -----------------------SLATVLTGVMVP--AGTVT---QPLLIPIGI----------- 152

  Fly   685 FAAAAATHQQQQQQQQQQVQQQREREREREREREREREREREQHLGIGHLPHSHLAADLRRSAER 749
                           ..||..|                    |.|.:..:|.:.:||
Mouse   153 ---------------TGQVAGQ--------------------QGLAVWTIPTATVAA-------- 174

  Fly   750 SP--TAGSPTGGSPGLAAKGPQPPPPGAAFLLQQQLHIKPETQTHLHHHLQTQSTSAVSSTLPQI 812
            .|  ||.|||||:       .:||..|                        .|:.:.:::.||
Mouse   175 LPGLTAASPTGGT-------FKPPLAG------------------------LQAAAVLNTALP-- 206

  Fly   813 SLRHPDELTAPQMDLKPLELS--ASTSPPAPPPRHHFGHSLRGSSTVSPKHSPQGRMGGSGGSTT 875
                     .|.....|::.|  |...|||.|               .|....|..:      .|
Mouse   207 ---------TPVQAAPPIQASSPAQPRPPAQP---------------QPLFQTQPLL------QT 241

  Fly   876 TGMNLSQHHERHDRLERLERQERHERRSHTPTATATRASVSSSSSAGHHGGSLPSGRLSPPS--S 938
            |...|.|                       |||....|....:..|.......|:|....|.  |
Mouse   242 TPAILPQ-----------------------PTAATVAAPTPKTVDATPQITVQPAGFAFSPGIIS 283

  Fly   939 APSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLERDYLGNGPSSGTATSTSSCGAPTAAG 1003
            |.|......|.....|:|:.....|....:|.......:...:|..|   ...:::|...|..|.
Mouse   284 AASLGGQTQILGSLTTAPVITNTIPSMPGISSQILTNAQGQVIGALP---WVVNSASVATPAPAQ 345

  Fly  1004 S----SATANVLSSINRLNASNGELTITKSLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQP 1064
            |    :.|..:|     |||....:....|...|...|.|      :.::| ..|:.|.|..:||
Mouse   346 SLQVQAVTPQLL-----LNAQGQVIATLASSPLPQPVAVR------KPNTP-ESPAKSEVQPIQP 398

  Fly  1065 LK---------------LSPSSR-------SEPPHLSPNGNDNDNDLLMDSPNEPTINQATTNVV 1107
            .:               |.||:.       ||.|.:|.         |:..|:.|::::
Mouse   399 TQAVPQPAVILTSPTPALKPSAATPIPITCSETPTVSQ---------LVSKPHTPSLDE------ 448

  Fly  1108 DGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQ 1172
            |||:|:||:||||.||:||||||||||||||||:.||||||||||||
Mouse   449 DGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAIC------------------ 495

  Fly  1173 NMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQAL 1237
             .|||||||||||||:|||||:|:.|||    .|.:.||.:|.:::|.||||||||||||||||:
Mouse   496 -RFEKLDITPKSAQKLKPVLEKWLMEAE----LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAI 555

  Fly  1238 ELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVRM 1286
            |.|||:||:|..|:|.|||.:|.:|.|:|||:|:||||:||.||||.::
Mouse   556 EALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKL 604

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm3	NP_001188885.2	Pou	1108..1200	CDD:473999	60/91 (66%)
		Homeodomain	1226..1282	CDD:459649	37/55 (67%)
Pou6f1	XP_006520671.1	PHA03247	<48..425	CDD:223021	118/607 (19%)
		Pou	448..522	CDD:473999	60/98 (61%)
		Homeodomain	544..600	CDD:459649	37/55 (67%)