DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and Pou2f2

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_001404061.1 Gene:Pou2f2 / 18987 MGIID:101897 Length:686 Species:Mus musculus


Alignment Length:431 Identity:115/431 - (26%)
Similarity:179/431 - (41%) Gaps:83/431 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   903 SHTPTATATRASVSSSSSAGHHGGSLPSGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHA 967
            |.:||..:|:..:.|.......|   |...||||.....:.:.:|...........:.|.||.. 
Mouse    41 SVSPTGPSTKVGILSGLHLTFWG---PGPCLSPPQIKAEDPSGDSAPAAPPPPQPAQPHLPQAQ- 101

  Fly   968 LSLGGS---------PRLERDYLGNGPS---------SGTATSTSSCGAPTAAGSSATANVLSSI 1014
            |.|.||         |..::..|....:         |..|.:.::..|..|:.||:|::..||.
Mouse   102 LMLTGSQLAGLSALIPAQQQLLLQQAQAQLLAAAVQQSSAAAANAAAAAAAASTSSSTSSASSST 166

  Fly  1015 NRLNASNGELTITKSL------GAPTATATRASSASPRDDS-----------PGPGPSTSSVSHM 1062
            ::..||:|...:..|.      |.|..|.::....:.:|..           ||        .|:
Mouse   167 SQTPASSGGGDLPPSQPTSQPPGTPQLTLSQPIQLTAQDIQQLLQLQQLVLVPG--------HHL 223

  Fly  1063 QPLK--LSPSSRSEPPHLSPNGN------DNDNDLLMDSP------NEPTINQATTNVVDGIDLD 1113
            ||..  |.|.::...|.|.|..|      .....||...|      ..|...:..::..:..||:
Mouse   224 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEEPSDLE 288

  Fly  1114 EIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQNMFEKL 1178
            |:::||:.||.||:.||.||..||.|:....|..:||:.|                   :.||.|
Mouse   289 ELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI-------------------SRFEAL 334

  Fly  1179 DITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTD-YIGVE--PSKKRKRRTSFTPQALELL 1240
            :::.|:..|:||:||:|:.:||....:......|.|:. .:|.:  |.::||:|||........|
Mouse   335 NLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFAL 399

  Fly  1241 NAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281
            ...|..|..|:..||..:|.||..|:||||:||||:||..|
Mouse   400 EKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEK 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 30/91 (33%)
Homeodomain 1226..1282 CDD:459649 26/56 (46%)
Pou2f2NP_001404061.1 POU 282..356 CDD:197673 30/92 (33%)
Homeodomain 385..441 CDD:459649 26/56 (46%)
POU2F1_C <559..635 CDD:437368
Blue background indicates that the domain is not in the aligned region.

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