DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdm3 and Pou2f1

DIOPT Version :9

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_035267.2 Gene:Pou2f1 / 18986 MGIID:101898 Length:793 Species:Mus musculus


Alignment Length:566 Identity:138/566 - (24%)
Similarity:224/566 - (39%) Gaps:147/566 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   740 AADLRRS--AERSPTAGSPTGGSPGLAAKG----PQPPPPGAAFLLQQQLHIKPETQTHLHHHLQ 798
            |||.|.:  :|.:.::......|.|....|    .||.|.|.|....|       .|..|.|..|
Mouse    19 AADSRMNNPSETNKSSMESEDASTGTQTNGLDFQKQPVPVGGAISTAQ-------AQAFLGHLHQ 76

  Fly   799 TQ----STSAVSSTLPQISLRHPDELTAPQMDLKPLELSASTSPPAPPPRHHFGHSLRGSSTVSP 859
            .|    |..|.:.:| .:..:..:|....|...:|     |:.||:.            .|.:  
Mouse    77 VQLAGTSLQAAAQSL-NVQSKSSEESGDSQQSSQP-----SSQPPSV------------QSAI-- 121

  Fly   860 KHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHERRSHTPTATATRASVSSSSSAGHH 924
               ||.::..:||. .||:.|:...::. .|::.:.|           |....|:|...|::..|
Mouse   122 ---PQTQLMLAGGQ-ITGLTLTPAQQQL-LLQQAQAQ-----------AQLLAAAVQQHSASQQH 170

  Fly   925 ---GGSLPSGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLERDYLGNGPS 986
               |.::.:...:|.:..|.:.......|      |.:....|...|:|       :.::...|:
Mouse   171 SAAGATISASAATPMTQIPLSQPIQIAQD------LQQLQQLQQQNLNL-------QQFVLVHPT 222

  Fly   987 SG--TATSTSSCGAPTAAGSSATANVLSSINRLNASN-----GELTITKSLGAPTATATRASSAS 1044
            :.  .|....|.......|.....|:|:.:.:.:.:|     ..:|:|.....||.|...||   
Mouse   223 TNLQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTIAAAS--- 284

  Fly  1045 PRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPN--EPTINQATTNVV 1107
                             :|.|   |.|:|.|..:             |:|:  ||:         
Mouse   285 -----------------VQTL---PQSQSTPKRI-------------DTPSLEEPS--------- 307

  Fly  1108 DGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQ 1172
               ||:|:::|||.||.||:.||.||..||.|:....|..:||:.|                   
Mouse   308 ---DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI------------------- 350

  Fly  1173 NMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHL-TDYIGVEP-SKKRKRRTSFTPQ 1235
            :.||.|:::.|:..|:||:||:|:.:||....:...|..:.| :..:|.|. :::||:|||....
Mouse   351 SRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGLNRRRKKRTSIETN 415

  Fly  1236 ALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281
            ....|...|..|..|:..:||.:|.||..|:||||:||||:||..|
Mouse   416 IRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRRQKEK 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:304656 31/91 (34%)
Homeobox 1228..1281 CDD:278475 23/52 (44%)
Pou2f1NP_035267.2 POU 304..378 CDD:197673 33/104 (32%)
Homeobox 408..461 CDD:278475 23/52 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.