DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and ceh-18

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_741758.1 Gene:ceh-18 / 180671 WormBaseID:WBGene00000441 Length:542 Species:Caenorhabditis elegans


Alignment Length:422 Identity:95/422 - (22%)
Similarity:161/422 - (38%) Gaps:127/422 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   922 GHHGGSLPSGRLS------------PPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSP 974
            |:|.|||.|..|.            .|.|...|.....|:.:  .||||                
 Worm   143 GNHNGSLNSHFLQQQFAAFKETVDPTPVSTNGNGLLTPITTQ--LSPLF---------------- 189

  Fly   975 RLERDYLGNGPSSGTATSTSSCGAPTAAGSSATANVLSSI--NRLNASNGELTITKSLGAPTATA 1037
                            |||.:..:|.....:.....|..:  |.|.|||..| ::..|.||:.|.
 Worm   190 ----------------TSTDAFNSPEKLLQAIMTPSLGFLGANGLGASNSGL-LSSPLIAPSPTL 237

  Fly  1038 TRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPTINQA 1102
            .::...:|          |...:.:.|.|    :.:.||.:|.....:...|..|:..   |..|
 Worm   238 LQSLMNTP----------TQPTASLTPKK----AENRPPVVSQTLKASKRRLFDDTSR---IEAA 285

  Fly  1103 TTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQL 1167
            :.:..|.||::|::.||:.||.:|:..|.||..||.||....|..:||:.|              
 Worm   286 SMSGDDRIDMNELEAFAQTFKKQRIKFGFTQGDVGVALGKRYGTDFSQTTI-------------- 336

  Fly  1168 STQQQNMFEKLDITPKSAQKIKPVLERWMKEAEES----------------HWNRYKSGQNHLTD 1216
                 :.||.|:::.|:..|::|:|:.|:.:.|.:                |     :|.:|...
 Worm   337 -----SRFEALNLSFKNMCKLRPLLKEWLADVEMAIEGGATVTDLIDKKTIH-----NGNHHTIH 391

  Fly  1217 YIGVEPS---------------------KKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAH 1260
            ::.:..:                     |:|::||:........|:..|..|..|...::|.:|:
 Worm   392 HVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNALDTFFALNPRPDHDKMTDIAN 456

  Fly  1261 QLGYEREVIRIWFCNKRQALKNTVRMMSKGMV 1292
            .|..:|:|:|:||||:||.::.....:...||
 Worm   457 SLELDRDVVRVWFCNRRQKMRRVDEPIEGEMV 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 28/91 (31%)
Homeodomain 1226..1282 CDD:459649 19/55 (35%)
ceh-18NP_741758.1 POU 290..364 CDD:197673 28/92 (30%)
Homeodomain 422..478 CDD:459649 19/55 (35%)

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