Protein Alignment pdm3 and Pou6f1

DIOPT Version :9

• Sequence 1: NP_001188885.2
• Gene: pdm3 / 35813
• FlyBaseID: FBgn0261588
• Length: 1292
• Species: Drosophila melanogaster
• Sequence 2: XP_038934171.1
• Gene: Pou6f1 / 116545
• RGDID: 620615
• Length: 615
• Species: Rattus norvegicus
• Alignment Length: 831
• Identity: 239/831 - (28%)
• Similarity: 325/831 - (39%)
• Gaps: 293/831 - (35%)

  Fly   486 PTSPTHNGGKSKTAKGGSSGNGSGGSSANSGTSSAQQQQQPDNPSSSSSPHHPLSASSLANVLAA 550
            |......|.:|..|.|..||          |.:.|   :.|...:.|..|.|  ||.:....|..
  Rat    42 PAEEESKGLESVAADGSQSG----------GPAEA---RGPAGEAGSCDPDH--SAEATVKSLPG 91

  Fly   551 ATASPPPSLQAPPASAQMPQLILASGQLVQGVQGAQLLIPTAQGIAVQTILTIPVSPQIPTTEQF 615
            ...||.|::.....:...|             |.:|.|.|          |.:..:||:.|.|
  Rat    92 IPPSPAPAIATLSQAPSQP-------------QASQTLTP----------LAVQAAPQVLTQE-- 131

  Fly   616 LPNAFGAFASYQQQQQQQQQQRDLLPPSLAALQHATALPQLAQTPTNLLKPNLFSTGVQQLLTAL 680
                                       |||.:.....:|..|.|     :|.|...|:
  Rat   132 ---------------------------SLATVLTGVMVPAGAVT-----QPLLIPIGI------- 157

  Fly   681 HPELFAAAAATHQQQQQQQQQQVQQQREREREREREREREREREREQHLGIGHLPHSHLAADLRR 745
                               ..||..|                    |.|.:..:|.:.:||
  Rat   158 -------------------TGQVAGQ--------------------QGLAVWTIPTATVAA---- 179

  Fly   746 SAERSP--TAGSPTGGS-----PGLAAKG------PQP----PPPGAAFLLQQQLHIKPETQTHL 793
                .|  ||.|||||:     .||.|..      |.|    ||..|:...|.:...:|:|....
  Rat   180 ----LPGLTAASPTGGAFKPPLAGLQAAAVLNTALPTPVQAAPPVQASSPAQPRPPAQPQTLFQT 240

  Fly   794 HHHLQTQSTSAVSSTLPQISLRHPDEL-TAPQMDLKPLELSASTSPPAPPPRHHFGHSLRGSSTV 857
            ...|||........|:..::...|..: .|||:.::|...:.|       |......||.|.:.:
  Rat   241 QQLLQTTPAILPQPTVATVAAPTPKPVDAAPQITVQPAGFAFS-------PGIISAASLGGQTQI 298

  Fly   858 SPKHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHERRSHTPTATATRASVSSSSS-- 920
            .             ||.||                            .|..|.|..|:...||
  Rat   299 L-------------GSLTT----------------------------APVITNTIPSMPGISSPI 322

  Fly   921 ----AGHHGGSLP----SGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLE 977
                .|...|:||    |..::.|  ||    |.|:..:..|..|..  :.||..::...|..|.
  Rat   323 LTNAQGQVIGALPWVVNSASVATP--AP----AQSLQVQAVTPQLLL--NAQGQVIATLASSPLP 379

  Fly   978 RDYLGNGPSSGTATSTSSCGAPTAAGSSATANVLSSINRLNASNGELTITKSLGAPTATATRASS 1042
            :......||:           |.:...|....:..              |:::..|....|
  Rat   380 QPVAVRKPST-----------PESPAKSEVQPIQP--------------TQAVPPPAVILT---- 415

  Fly  1043 ASPRDDSPGPG--PSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPTINQATTN 1105
                  ||.|.  ||.|:     |:   |.:.||.|.:|.         |:..|:.|::::
  Rat   416 ------SPAPALKPSASA-----PI---PITCSETPTVSQ---------LVSKPHTPSLDE---- 453

  Fly  1106 VVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQ 1170
              |||:|:||:||||.||:||||||||||||||||:.||||||||||||
  Rat   454 --DGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAIC---------------- 500

  Fly  1171 QQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQ 1235
               .|||||||||||||:|||||:|:.|||    .|.:.||.:|.:::|.|||||||||||||||
  Rat   501 ---RFEKLDITPKSAQKLKPVLEKWLNEAE----LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQ 558

  Fly  1236 ALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVRM 1286
            |:|.|||:||:|..|:|.|||.:|.:|.|:|||:|:||||:||.||||.::
  Rat   559 AIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKL 609

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm3	NP_001188885.2	Pou	1108..1200	CDD:304656	60/91 (66%)
		Homeobox	1228..1281	CDD:278475	34/52 (65%)
Pou6f1	XP_038934171.1	PHA03247	<45..430	CDD:223021	118/609 (19%)
		POU	453..527	CDD:197673	60/98 (61%)
		Homeobox	551..605	CDD:395001	35/53 (66%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	81	1.000	Domainoid score	I8314
eggNOG	1	0.900	-	-		E1_KOG3802
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0004074
OrthoInspector	1	1.000	-	-		otm44485
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11636
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.910