DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and Pou2f3

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_001099215.1 Gene:Pou2f3 / 116544 RGDID:621691 Length:430 Species:Rattus norvegicus


Alignment Length:448 Identity:113/448 - (25%)
Similarity:163/448 - (36%) Gaps:144/448 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   857 VSPKHSPQGRMGGSGGSTTTGMNLSQHHERHDR--LERLERQERHERRSHTPTATATRASVSSSS 919
            :.|.|:.....|....||.......|....:||  |: ..||.:.|....|           ...
  Rat     4 LEPMHTEIKMSGDVADSTDARSTFGQVESGNDRNGLD-FNRQIKTEDLGDT-----------LQQ 56

  Fly   920 SAGHHGGSLPSGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLG---------GSPR 975
            |..|....|..|    |:..|.|..:   .|.....||.:.....||..|:.         |...
  Rat    57 SLSHRPCHLSQG----PTMMPGNQMS---GDMASLHPLQQLVLVPGHLQSVSQFLLSQTPPGQQG 114

  Fly   976 LERDYLGNG--------PSSGTATSTSSCGAPTAAGSSATANVLSSINRLNASNGELTITKSLGA 1032
            |:.:.|...        |.:|...::.:.|.|..:|||...::.:|                   
  Rat   115 LQPNLLSFPQQQSTLLLPQTGPGLTSQAVGRPGLSGSSLEPHLEAS------------------- 160

  Fly  1033 PTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHL-SPNGNDNDNDLLMDSPNE 1096
                          ...||                       |.|| .|.|||           |
  Rat   161 --------------QHLPG-----------------------PKHLPGPGGND-----------E 177

  Fly  1097 PTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQ 1161
            ||            ||:|:::|||.||.||:.||.||..||.|:....|..:||:.|        
  Rat   178 PT------------DLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI-------- 222

  Fly  1162 MYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNH---LTDYIGVEPS 1223
                       :.||.|:::.|:..|:||:||:|:.:||.|..:...|..:.   |::..|    
  Rat   223 -----------SRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSASTPSSYPTLSEVFG---- 272

  Fly  1224 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281
            :|||:|||........|...|:.|..||..||:.:|.||..|:||:|:||||:||..|
  Rat   273 RKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEK 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 31/91 (34%)
Homeodomain 1226..1282 CDD:459649 26/56 (46%)
Pou2f3NP_001099215.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..40 8/35 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..81 6/27 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 129..180 20/129 (16%)
POU 176..250 CDD:197673 35/115 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..267 4/18 (22%)
Homeodomain 275..331 CDD:459649 26/56 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..413
Blue background indicates that the domain is not in the aligned region.

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