DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and pou1f1

DIOPT Version :9

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:XP_031752450.1 Gene:pou1f1 / 100492413 XenbaseID:XB-GENE-854097 Length:373 Species:Xenopus tropicalis


Alignment Length:426 Identity:118/426 - (27%)
Similarity:167/426 - (39%) Gaps:148/426 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   915 VSSSSSAG-----HHGGS--LPSGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGG 972
            ::|.|||.     ||..:  ||          .:|..||.:|    |.|         ..|||..
 Frog    15 LNSDSSAAFPLRMHHSAAEYLP----------VTNHTANVVS----TVP---------SVLSLVQ 56

  Fly   973 SPRLERDYLG-----NGPSSGTATSTSSCG---------------APTA----AGSSATANVLS- 1012
            .|:....|:.     |.| :|......||.               .|||    :.|.:...:|. 
 Frog    57 IPKCSHVYVSVPDVDNTP-AGLHYPNPSCHYGNQHQSTYGVMAGIKPTAPEMLSASISQTRILQT 120

  Fly  1013 -SINRLNASNGELTIT---KSLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRS 1073
             |:...|..||..|:.   |..|...|.:..|.|                   :.|..:|.||.:
 Frog   121 CSMPLSNVVNGVGTLQGKWKVHGYTLAFSVHAGS-------------------LPPCLMSASSCT 166

  Fly  1074 -----EPPHLSPNGND----------------NDNDLLMDSPNEPTINQATTNVVDGIDLDEIKE 1117
                 .|.|.|..|.|                .|..:.||||                ::.|:::
 Frog   167 IGHGFTPVHQSLLGEDITTTDFKQEFRRKNKPIDEPIDMDSP----------------EIRELEK 215

  Fly  1118 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITP 1182
            ||..||:||:.||.|||.||:||:...|..:||:.||                   .||.|.::.
 Frog   216 FANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTIC-------------------RFENLQLSF 261

  Fly  1183 KSAQKIKPVLERWMKEAEE--SHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFE 1245
            |:|.|:|.:|.:|:.|||:  :.:|. |.|.|          .:||||||:.:..|.|.|.:||.
 Frog   262 KNACKLKSILSKWLDEAEQVGALYNE-KIGGN----------ERKRKRRTTISIAAKEALESHFG 315

  Fly  1246 RNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281
            ..:.||..||..:|..|..|:||:|:||||:||..|
 Frog   316 EQSKPSSQEIMRMAEGLNLEKEVVRVWFCNRRQREK 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:304656 31/91 (34%)
Homeobox 1228..1281 CDD:278475 24/52 (46%)
pou1f1XP_031752450.1 POU 205..279 CDD:197673 35/108 (32%)
Homeobox 298..352 CDD:395001 25/54 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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