DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm3 and pou3f4

DIOPT Version :10

Sequence 1:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_001090728.1 Gene:pou3f4 / 100036711 XenbaseID:XB-GENE-479667 Length:360 Species:Xenopus tropicalis


Alignment Length:411 Identity:115/411 - (27%)
Similarity:163/411 - (39%) Gaps:101/411 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   907 TATATRASVSSSSSAGHHGGSLPSGRLSP---PSSAPSNSAANSISDRGYTSPLFRTHSPQGH-- 966
            ||.:...|:.||||..|....:..|  ||   |.....:.....:...|:         |.||  
 Frog     3 TAASNPYSILSSSSLVHDSAIMQQG--SPFRNPQKLLQSDYLQGVPSNGH---------PLGHHW 56

  Fly   967 ----------ALSLGGSPRLERD--------YLG---NGPSSGTATSTSSCGAPTAAGSSATANV 1010
                      :.|||.||..::|        .||   :..|......:.....|.|.|:|...| 
 Frog    57 VTSLSDANPWSTSLGSSPLDQQDIKPGREDLQLGAIIHHRSPHVTHHSPHTNHPNAWGASPAHN- 120

  Fly  1011 LSSINRLNASNGE-LTITKSLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSE 1074
             ||:    .|||: :.:....|...:........:|    |.|..:|.|        |.|..|..
 Frog   121 -SSL----TSNGQPINVYSQSGFTVSGMLDHGGLTP----PPPSGTTQS--------LHPVLREP 168

  Fly  1075 PPHLSPNGNDNDNDLLMDSPNEPTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQA 1139
            ..|     .|..:....|..:|.|...           ||:::|||.||.||:.||.||..||.|
 Frog   169 VDH-----GDLGSHHCQDHSDEETPTS-----------DELEQFAKQFKQRRIKLGFTQADVGLA 217

  Fly  1140 LSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHW 1204
            |....|..:||:.||                   .||.|.::.|:..|:||:|.:|::||:.|  
 Frog   218 LGTLYGNVFSQATIC-------------------RFEALQLSFKNMCKLKPLLNKWLEEADSS-- 261

  Fly  1205 NRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVI 1269
                :|.....|.|..: .:|||:|||.......:|..||.:...|:..||:.||..|..|:||:
 Frog   262 ----TGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVV 321

  Fly  1270 RIWFCNKRQALKNTVRMMSKG 1290
            |:||||:||..|   ||...|
 Frog   322 RVWFCNRRQKEK---RMTPPG 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm3NP_001188885.2 Pou 1108..1200 CDD:473999 32/91 (35%)
Homeodomain 1226..1282 CDD:459649 24/55 (44%)
pou3f4NP_001090728.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..130 10/37 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..191 13/75 (17%)
POU 185..259 CDD:197673 34/103 (33%)
Homeodomain 278..334 CDD:459649 25/58 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 332..360 4/11 (36%)

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