DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpn and her1

DIOPT Version :9

Sequence 1:NP_476923.1 Gene:dpn / 35800 FlyBaseID:FBgn0010109 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_571153.1 Gene:her1 / 30287 ZFINID:ZDB-GENE-980526-125 Length:328 Species:Danio rerio


Alignment Length:454 Identity:103/454 - (22%)
Similarity:166/454 - (36%) Gaps:173/454 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 MSNPNGLSKAELRKTNKPIMEKRRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKH 93
            |..|...|:...::..||::||:||.|||..|.||::|:|:.......::.|||||:|||:.|::
Zfish     1 MVTPKMASRRPTKRILKPVIEKKRRDRINQRLEELRTLLLDNTLDSRLQNPKLEKAEILELAVEY 65

  Fly    94 LQS------------------------VQRQQLNMAIQSDPSVVQK--------FKTGFVECAEE 126
            :::                        .:|.|:..|  |.|..:|.        :|.||.||   
Zfish    66 IRTKTATARDQGDSSKDTHDPKPPPLLSRRPQMPCA--SIPESIQTHNSPSNPIYKAGFKEC--- 125

  Fly   127 VNRYVSQMDGIDTGVR----QRLSAHLNQCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPT--P 185
            ::|..|.:|.::...|    |.|..||:..:::|                  |...|::.||  |
Zfish   126 ISRSASFIDCVEPSQRDSFVQGLCHHLDSYSSAL------------------PHGRVSSNPTHHP 172

  Fly   186 LFPSLPQDLNNNSRTES-----SAPAIQMGGLQLIPSRL----PSGEFALIMPNTGSAAPPPGPF 241
            ..|:  .:|:..:..:|     :.|........|.|...    |:|:...:.| ..|.:|||.| 
Zfish   173 WIPN--PELSCRTDVQSIGHMRANPEPYSYANSLYPKSFMHLHPTGQHPYLSP-PYSISPPPSP- 233

  Fly   242 AWPGSAAGVAAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTLPGQTQL 306
                       |.:|::....::||:|                  |||...|             
Zfish   234 -----------GFSSSSPPFSSSPTYL------------------SVPCQFP------------- 256

  Fly   307 PVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFSTPPPTSAETSFNTSGSLNLSAG 371
                  .||     |||.|..:|.::|                    |.:..|.:|: ||.:..|
Zfish   257 ------FPP-----SISPHSTDSSSSS--------------------TLSTVSLSTT-SLPVVPG 289

  Fly   372 SHDSSGCSRPLAHLQQQQVSSTSGIAKRDREAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW 435
            .|              .||||.:    |.|.:.:..|       |..:.|..|:..:...||||
Zfish   290 PH--------------LQVSSPT----RVRFSGSVQS-------SQPRTLRRALFHNQPLWRPW 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpnNP_476923.1 HLH 39..101 CDD:238036 24/85 (28%)
ORANGE 114..158 CDD:128787 15/55 (27%)
her1NP_571153.1 HLH 10..67 CDD:238036 23/56 (41%)
Hairy_orange 118..157 CDD:284859 13/41 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4304
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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