DRSC/TRiP Functional Genomics Resources

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Protein Alignment LRP1 and ImpE1

DIOPT Version :10

Sequence 1:NP_001260800.2 Gene:LRP1 / 35799 FlyBaseID:FBgn0053087 Length:4752 Species:Drosophila melanogaster
Sequence 2:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster


Alignment Length:308 Identity:90/308 - (29%)
Similarity:120/308 - (38%) Gaps:86/308 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  2774 CGNSTICIM--PRWRCD--GDPDCPDGTDELDCANHTSLSCDPGQFRC-ASGNCIAGSWHCDGEK 2833
            |.:...|.:  |...|:  |..||..|.:...|:...: .|.||.|:| :||.||:..:.|||..
  Fly  1365 CSSDRQCQLADPHTVCNRRGVCDCAAGEEGSQCSAERT-GCSPGTFQCRSSGVCISWFFVCDGRA 1428

  Fly  2834 DCPDGSDEINCRTECRHNQFACDKTCIPASWQCDGKSDCEDGSDEGPQCPNRPCRPHLFQCKSSG 2898
            ||.|.|||     ||.||...                             |:.|....|:|:.||
  Fly  1429 DCNDASDE-----ECTHNARL-----------------------------NQTCPTESFRCQRSG 1459

  Fly  2899 RCIPQKWVCDGEKDCPSG---LGDEGSEDEGPQCGGVAHIPDCPPPAHLCTSGLCIDSHYVCDGD 2960
            |||.:..:|||.:.||.|   ||.:||..     ||.|    ||.....|.||.|:..:..|:..
  Fly  1460 RCISRAALCDGRRQCPHGEDELGCDGSVK-----GGNA----CPEHTFRCGSGECLPEYEYCNAI 1515

  Fly  2961 EDCPGGDDEYEGCVPAFQPHSCPGGSL----MHQCQDGLCIFKNQTCDGKPDCGDGSDETSSLCA 3021
            ..|..|.||        .||.|...:|    |...:.|..:            |.|..|..:.|.
  Fly  1516 VSCKDGSDE--------PPHLCGSRALPNLFMRLIEAGGLL------------GGGRREADAYCP 1560

  Fly  3022 HTRGCNGTDDFRCKNGACIHADLLCDRRNDCADFSDEELCNVNECLIP 3069
            |          ||.||.|....::|..|:.|.|.:||:.|:|..|..|
  Fly  1561 H----------RCSNGLCRSTAIVCSGRDGCGDGTDEQTCSVCRCPAP 1598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRP1NP_001260800.2 LDLa 87..118 CDD:197566
LDLa 126..163 CDD:238060
EGF_CA 246..283 CDD:214542
Ldl_recept_b 449..487 CDD:459654
LY 472..513 CDD:214531
LY 817..852 CDD:214531
LDLa 1057..1092 CDD:197566
LDLa 1104..1134 CDD:238060
LDLa 1191..1226 CDD:238060
FXa_inhibition 1289..1317 CDD:464251
LY 1434..1476 CDD:214531
LY 1477..1521 CDD:214531
LY 1533..1567 CDD:214531
LY 1568..1611 CDD:214531
FXa_inhibition 1639..1676 CDD:464251
LY 1751..1789 CDD:214531
LY 1794..1838 CDD:214531
LY 2078..2112 CDD:214531
NHL <2082..>2152 CDD:302697
NHL repeat 2082..2120 CDD:271320
FXa_inhibition 2269..2303 CDD:464251
LY 2430..2471 CDD:214531
LY 2475..2517 CDD:214531
LDLa 2630..2661 CDD:238060
LDLa 2671..2702 CDD:238060
LDLa 2727..2759 CDD:238060
LDLa 2773..2802 CDD:238060 8/31 (26%)
LDLa 2810..2844 CDD:238060 18/34 (53%)
LDLa 2848..2878 CDD:238060 3/29 (10%)
LDLa 2887..2916 CDD:197566 13/28 (46%)
LDLa 2938..2969 CDD:197566 9/30 (30%)
LDLa 2989..3015 CDD:197566 3/25 (12%)
LDLa 3030..3061 CDD:238060 11/30 (37%)
EGF_CA 3062..>3091 CDD:214542 3/8 (38%)
EGF_CA 3103..3141 CDD:214542
LY 3212..3254 CDD:214531
Ldl_recept_b 3275..3314 CDD:459654
LY 3299..3340 CDD:214531
LY 3354..3389 CDD:214531
LDLa 3458..3490 CDD:238060
LDLa 3499..3533 CDD:238060
LDLa 3582..3616 CDD:238060
LDLa 3621..3652 CDD:197566
LDLa 3663..3697 CDD:238060
LDLa 3702..3736 CDD:238060
LDLa 3776..3808 CDD:197566
LDLa 3818..3849 CDD:197566
LDLa 3860..3894 CDD:238060
YncE 3935..4148 CDD:442618
LY 4108..4150 CDD:214531
EGF_CA <4386..4414 CDD:238011
EGF_CA 4415..4450 CDD:238011
ImpE1NP_524849.2 EB 75..131 CDD:460294
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060 18/37 (49%)
LDLa 1448..1483 CDD:238060 15/34 (44%)
LDLa 1493..1524 CDD:238060 9/30 (30%)
Blue background indicates that the domain is not in the aligned region.

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