Sequence 1: | NP_001260800.2 | Gene: | LRP1 / 35799 | FlyBaseID: | FBgn0053087 | Length: | 4752 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001128355.1 | Gene: | Lrp12 / 314941 | RGDID: | 1304943 | Length: | 858 | Species: | Rattus norvegicus |
Alignment Length: | 536 | Identity: | 136/536 - (25%) |
---|---|---|---|
Similarity: | 184/536 - (34%) | Gaps: | 215/536 - (40%) |
- Green bases have known domain annotations that are detailed below.
Fly 3416 GNPCLA--------ANCSTLCVLSPEEPYYKCMCPTNFILADDGRT-------C----RAN---- 3457
Fly 3458 ---------------CTAAHFECVNTYKCIPFYWRCDT------------------QDDC----- 3484
Fly 3485 ------GDGSDEPETCPPFHCEPGQYQCANKKCTHPSNLCDGINQCGDGSDELNCDKFTCFDNHM 3543
Fly 3544 KCGATANSSAFCVDNVKRCDGVKDCPGGEDESACTPLVCKKDQFQCGNN-----RCMPFVWVCDG 3603
Fly 3604 DIDCPDKSDEANCDNVSCG------------PN--DFQCDSGRCIPLAWRCD-DDH--------- 3644
Fly 3645 ------------DCPNG-EDEP------ASCFSSKATCD--------PTYF---KCNNSK----- 3674
Fly 3675 ------CIPGRWRCDYENDCGDGSDELNCQMRNCSESEFRCGTGKCIKHNYRCDGEIHCDDNSDE 3733
Fly 3734 INCNITCKENQFKCAAFNTCINKQYKCDGDDDCPDGSDEVNC-TCHSDHFSCGNGKCIMSRWKCD 3797
Fly 3798 GWDDCLDGSDESLETC 3813 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LRP1 | NP_001260800.2 | LDLa | 87..118 | CDD:197566 | |
LDLa | 126..163 | CDD:238060 | |||
EGF_CA | 246..283 | CDD:214542 | |||
Ldl_recept_b | 449..487 | CDD:278487 | |||
LY | 472..513 | CDD:214531 | |||
LY | 817..852 | CDD:214531 | |||
LDLa | 1057..1092 | CDD:197566 | |||
LDLa | 1104..1134 | CDD:238060 | |||
FXa_inhibition | 1289..1317 | CDD:291342 | |||
LY | 1434..1476 | CDD:214531 | |||
LY | 1477..1521 | CDD:214531 | |||
LY | 1533..1567 | CDD:214531 | |||
LY | 1568..1611 | CDD:214531 | |||
FXa_inhibition | 1639..1676 | CDD:291342 | |||
LY | 1794..1838 | CDD:214531 | |||
LY | 2078..2112 | CDD:214531 | |||
NHL | <2082..>2152 | CDD:302697 | |||
NHL repeat | 2082..2120 | CDD:271320 | |||
FXa_inhibition | 2269..2303 | CDD:291342 | |||
LY | 2430..2471 | CDD:214531 | |||
LY | 2475..2517 | CDD:214531 | |||
LDLa | 2630..2661 | CDD:238060 | |||
LDLa | 2671..2702 | CDD:238060 | |||
LDLa | 2727..2759 | CDD:238060 | |||
LDLa | 2773..2802 | CDD:238060 | |||
LDLa | 2810..2844 | CDD:238060 | |||
LDLa | 2848..2878 | CDD:238060 | |||
LDLa | 2887..2916 | CDD:197566 | |||
LDLa | 2938..2969 | CDD:197566 | |||
LDLa | 2989..3015 | CDD:197566 | |||
LDLa | 3030..3061 | CDD:238060 | |||
EGF_CA | 3062..>3091 | CDD:214542 | |||
EGF_CA | 3103..3141 | CDD:214542 | |||
LY | 3212..3254 | CDD:214531 | |||
LY | 3255..3297 | CDD:214531 | |||
LY | 3299..3340 | CDD:214531 | |||
LY | 3354..3389 | CDD:214531 | |||
LDLa | 3458..3490 | CDD:238060 | 11/60 (18%) | ||
LDLa | 3499..3533 | CDD:238060 | 13/33 (39%) | ||
LDLa | 3582..3616 | CDD:238060 | 16/38 (42%) | ||
LDLa | 3621..3652 | CDD:197566 | 13/67 (19%) | ||
LDLa | 3663..3697 | CDD:238060 | 8/55 (15%) | ||
LDLa | 3702..3736 | CDD:238060 | 11/33 (33%) | ||
LDLa | 3776..3808 | CDD:197566 | 14/31 (45%) | ||
LDLa | 3818..3849 | CDD:197566 | |||
LDLa | 3860..3894 | CDD:238060 | |||
NHL | 4029..>4158 | CDD:302697 | |||
NHL repeat | 4034..4074 | CDD:271320 | |||
NHL repeat | 4076..4115 | CDD:271320 | |||
LY | 4108..4150 | CDD:214531 | |||
NHL repeat | 4121..4158 | CDD:271320 | |||
EGF_CA | <4386..4414 | CDD:238011 | |||
EGF_CA | 4415..4450 | CDD:238011 | |||
Lrp12 | NP_001128355.1 | CUB | 47..158 | CDD:238001 | 20/115 (17%) |
LDLa | 166..200 | CDD:238060 | 13/33 (39%) | ||
LDLa | 215..254 | CDD:238060 | 16/38 (42%) | ||
CUB | 267..371 | CDD:238001 | 18/106 (17%) | ||
LDLa | 375..410 | CDD:238060 | 16/60 (27%) | ||
LDLa | 413..448 | CDD:238060 | 11/34 (32%) | ||
LDLa | 451..485 | CDD:238060 | 17/35 (49%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |