DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpin and PAH1

DIOPT Version :9

Sequence 1:NP_001188884.1 Gene:Lpin / 35790 FlyBaseID:FBgn0263593 Length:1089 Species:Drosophila melanogaster
Sequence 2:NP_013888.1 Gene:PAH1 / 855201 SGDID:S000004775 Length:862 Species:Saccharomyces cerevisiae


Alignment Length:1135 Identity:287/1135 - (25%)
Similarity:420/1135 - (37%) Gaps:484/1135 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNSLARVFSNFRDFYNDINAATLTGAIDVIVVEQRDGEFQCSPFHVRFGKLGVLRSREKVVDIEI 65
            |..:.|...:....::.||.|||:|||||||||..||...||||||||||..:|:..:|.|.:.|
Yeast     1 MQYVGRALGSVSKTWSSINPATLSGAIDVIVVEHPDGRLSCSPFHVRFGKFQILKPSQKKVQVFI 65

  Fly    66 NGVPVDIQMKLGDSGEAFFVEECLEDEDEELPANLATSPIPNSFLASRDKANDTMEDISGVVTDK 130
            |....::.|||.|||||:||.| :.|:..::|..|..||:                         
Yeast    66 NEKLSNMPMKLSDSGEAYFVFE-MGDQVTDVPDELLVSPV------------------------- 104

  Fly   131 NASEELLLPLPLPRRNSIDFSKEEPKEAVVEGSKFENQVSDYTQRRHTDNTLERRNLSEKLKEFT 195
                          .::.....:.|:.:::||.              |:...|..|.::| ||  
Yeast   105 --------------MSATSSPPQSPETSILEGG--------------TEGEGEGENENKK-KE-- 138

  Fly   196 TQKIRQEWAEHEELFQGEKKPADSDSLDNQSKASNEAETEKAIPAVIEDTEKEKDQIKPDVNLTT 260
             :|:.:|             |...|..|.....|..:||..:    :..||.           :|
Yeast   139 -KKVLEE-------------PDFLDINDTGDSGSKNSETTGS----LSPTES-----------ST 174

  Fly   261 VTTSEATKEVSKSKTKKRRKKSQMKKNAQRKNSSSSSLGSAGGGDLPSAETPSLGVSNIDEGDAP 325
            .|..::.:|        |:...|..||.|:|.:..                              
Yeast   175 TTPPDSVEE--------RKLVEQRTKNFQQKLNKK------------------------------ 201

  Fly   326 ISSATNNNNTSSSNDEQLSAPLVTARTGDDSPLSEIPHTPTSNPRLDLDIHFFSDTEITTPVGGG 390
                                            |:|| |.|:   :||.:.....|||        
Yeast   202 --------------------------------LTEI-HIPS---KLDNNGDLLLDTE-------- 222

  Fly   391 GAGSGRAAGGRPSTPIQSDSELETTMRDNRHVVTEESTASWKWGELPTPEQAKNEAMSAAQVQQS 455
                    |.:|:..:..|::::.     :.::.:|      :|         |:          
Yeast   223 --------GYKPNKNMMHDTDIQL-----KQLLKDE------FG---------ND---------- 249

  Fly   456 EHQSMLSNMFSFMKRANRLRKEKGVGEVGDI-------YLSDLDAGSMDPEMAALYFPSPLSKAA 513
                  |::.||:|      ::|.    |:|       :|:||                      
Yeast   250 ------SDISSFIK------EDKN----GNIKIVNPYEHLTDL---------------------- 276

  Fly   514 SPPEEDGESGNGTSLPHSPSSLEEGQKSIDSDFDETKQQRDNNRYLDFVAMSMCGMSEQGAPPSD 578
            |||                                                        |.||  
Yeast   277 SPP--------------------------------------------------------GTPP-- 283

  Fly   579 EEFDRHLVNYPDVCKSPSIFSSPNLVVRLNGKYYTWMAACPIVMTMITFQKPLTHDAIEQLMSQT 643
                                                        ||.|....|..||:|      
Yeast   284 --------------------------------------------TMATSGSVLGLDAME------ 298

  Fly   644 VDGKCLPGDEKQEAVAQADNGGQTKRYWWSWRRSQDAAPNHLNNTHGMPLGKDEKDGDQAAVATQ 708
                                .|.|                 ||:....|.|.|.:|         
Yeast   299 --------------------SGST-----------------LNSLSSSPSGSDTED--------- 317

  Fly   709 TSRPTSPDITDPTLSKSDSLVNAENTSALVDNLEELTMASNKSDEPKERYKKSLRLSSAAIKKLN 773
                      :.:.||..| ..:|.||         ...:..|.|.::||.:::||::..:|.||
Yeast   318 ----------ETSFSKEQS-SKSEKTS---------KKGTAGSGETEKRYIRTIRLTNDQLKCLN 362

  Fly   774 LKEGMNEIEFSVTTAYQGTTRCKCYLFRWKHNDKVVISDIDGTITKSDVLGHILPMVGKDWAQLG 838
            |..|.|:::|||.   .|.......||.|:.:..:|||||||||||||.|||:|.|:||||..||
Yeast   363 LTYGENDLKFSVD---HGKAIVTSKLFVWRWDVPIVISDIDGTITKSDALGHVLAMIGKDWTHLG 424

  Fly   839 VAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLLLNPTSLISAFHREVIE 903
            ||:|||:|.:|||.:|||:||:.||:..||.|||||.|....||:||::|:|...::|..||||.
Yeast   425 VAKLFSEISRNGYNILYLTARSAGQADSTRSYLRSIEQNGSKLPNGPVILSPDRTMAALRREVIL 489

  Fly   904 KKPEQFKIACLSDIRDLF---PDKE--------PFYAGYGNRINDVWAYRAVGIPIMRIFTINTK 957
            ||||.||||||:|||.|:   .|.|        ||:||:||||.|..:||.||||..|||||||:
Yeast   490 KKPEVFKIACLNDIRSLYFEDSDNEVDTEEKSTPFFAGFGNRITDALSYRTVGIPSSRIFTINTE 554

  Fly   958 GELKHELTQT--FQSSGYINQSLEVDEYFPLLTNQDEFDYRT--------------DIFDDE--- 1003
            ||:..||.:.  ::|| ||:.:..||.:||.: :.|..|.||              |.||.|   
Yeast   555 GEVHMELLELAGYRSS-YIHINELVDHFFPPV-SLDSVDLRTNTSMVPGSPPNRTLDNFDSEITS 617

  Fly  1004 ------ESEEELQFSD-----DYDVDVEH----GSSEESSGDEDDDEALYNDDFANDDNGIQ-AV 1052
                  ...:|.:|:|     |..||:::    .:.:..:.|||.|.:..::...|..|.:: |.
Yeast   618 GRKTLFRGNQEEKFTDVNFWRDPLVDIDNLSDISNDDSDNIDEDTDVSQQSNISRNRANSVKTAK 682

  Fly  1053 VASGDERTADVGLIMRVRRVSTKNEVIMAS 1082
            |....:|        .|...:..|||:.||
Yeast   683 VTKAPQR--------NVSGSTNNNEVLAAS 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpinNP_001188884.1 Lipin_N 1..103 CDD:282436 47/101 (47%)
Lipin_mid 562..671 CDD:293481 12/108 (11%)
LNS2 760..985 CDD:285447 122/237 (51%)
PAH1NP_013888.1 SMP2 1..609 CDD:227415 262/1030 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346287
Domainoid 1 1.000 226 1.000 Domainoid score I430
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 337 1.000 Inparanoid score I416
Isobase 1 0.950 - 0 Normalized mean entropy S3103
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001100
OrthoInspector 1 1.000 - - oto99638
orthoMCL 1 0.900 - - OOG6_100990
Panther 1 1.100 - - LDO PTHR12181
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R805
SonicParanoid 1 1.000 - - X664
TreeFam 1 0.960 - -
1413.730

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