DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpin and pitpnc1b

DIOPT Version :9

Sequence 1:NP_001188884.1 Gene:Lpin / 35790 FlyBaseID:FBgn0263593 Length:1089 Species:Drosophila melanogaster
Sequence 2:XP_005157947.1 Gene:pitpnc1b / 492803 ZFINID:ZDB-GENE-041114-158 Length:305 Species:Danio rerio


Alignment Length:260 Identity:46/260 - (17%)
Similarity:81/260 - (31%) Gaps:94/260 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EFQCS---PFHVRFGKLGVLRSREKVVDIEINGVPVDIQMKLGDSGEAFFVEECLED--EDEELP 97
            |:.||   .|||:                      ::...| .|:|       |.::  .|:..|
Zfish    96 EYTCSFLPRFHVK----------------------IETHFK-NDNG-------CSKNVFGDDPTP 130

  Fly    98 ------ANLATSPIPNSFLASRDKANDTMEDISGVVTDKNASEELLLPLPLPRRNSIDFSKEEPK 156
                  .::.:.|||       :|.....||:|..|::|.....|           :|..:.:.|
Zfish   131 MDNVCFLDILSDPIP-------EKNYKKSEDLSDWVSEKTGRGPL-----------VDGWRNDTK 177

  Fly   157 EAVVEGSK---------FENQVSDYTQRRHTD------------------NTLER-RNLSEKLKE 193
            ..:....:         |:.:..|:..|...|                  .|||: |....|.:|
Zfish   178 PIMCSYKRVTCSFEVYGFQGRTEDFVHRNIRDILLVGHRQAVAWIDEWHGMTLEQVREFERKQQE 242

  Fly   194 FTTQKIRQEWAEHEELFQGEKKPADSDSLDNQSKASNEAETEKAIPAVIEDTEKEKDQIKPDVNL 258
            .|..|::.:.|      .....||...|.......::|:..:| :.....|....:..:|..|.|
Zfish   243 ETNCKLKSDIA------SPGSDPAIRPSFTRSISVTDESSLKK-MGVTTLDIPSSQSSLKGPVRL 300

  Fly   259  258
            Zfish   301  300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpinNP_001188884.1 Lipin_N 1..103 CDD:282436 12/75 (16%)
Lipin_mid 562..671 CDD:293481
LNS2 760..985 CDD:285447
pitpnc1bXP_005157947.1 SRPBCC 2..249 CDD:301327 36/200 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.