DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpin and rdgB

DIOPT Version :9

Sequence 1:NP_001188884.1 Gene:Lpin / 35790 FlyBaseID:FBgn0263593 Length:1089 Species:Drosophila melanogaster
Sequence 2:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster


Alignment Length:1271 Identity:251/1271 - (19%)
Similarity:397/1271 - (31%) Gaps:489/1271 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 AIDVIVVEQRDGEFQCSPFHVRFGKLGVLRSREKVVDIEINGVPVDI---QMKLGDSGEAFFVEE 87
            ::|:......|..:|.:.|.:....|     |.::||:      :||   |:..||     :|:|
  Fly   108 SLDIETYYYPDNGYQDNVFQLSGSDL-----RNRIVDV------IDIVKDQLWGGD-----YVKE 156

  Fly    88 CLEDEDEELPANLATSPIPNSFLASRDK------ANDTMEDISGVVTDKNASEELLLPLPLPRRN 146
                ||            |..|::  ||      |.|.:|:....|..|..        |.||..
  Fly   157 ----ED------------PKHFVS--DKTGRGPLAEDWLEEYWREVKGKKQ--------PTPRNM 195

  Fly   147 SIDFSKEEPKEAVVE------GSKFENQVSDYTQRRHTDNTLERRNLSEKLKEFTTQKIRQEWAE 205
            |:   ....|...||      .:|.|..:.|..                 |::...:..||.||.
  Fly   196 SL---MTAYKICRVEFRYWGMQTKLEKFIHDVA-----------------LRKMMLRAHRQAWAW 240

  Fly   206 HEELF-----------------------QGEKKPADSDSLDNQSKASNEAET-----EKAIPAV- 241
            .:|.|                       .||:...||.|....|.|:..|.|     :|:.||| 
  Fly   241 QDEWFGLTIEDIRELERQTQLALAKKMGGGEECSDDSVSEPYVSTAATAASTTGSERKKSAPAVP 305

  Fly   242 ---------------------IEDTEKEKDQIKPDVNLTTVTTSEATKEVSKSKTKKRRKKSQMK 285
                                 .:|.|.|.|.|...|:|:......|           :|.:||..
  Fly   306 PIVTQQPPSAEASSDEEGEEEEDDDEDENDAIGTGVDLSANQGGSA-----------QRSRSQSI 359

  Fly   286 KNAQR-----KNSSSSSLGSAGGGDL----PSAET-PSLGVSNIDEGDAPISSATNNN------- 333
            :.||:     |.:..|.:|||...||    |.|:| |...|:|.......:.|.:|::       
  Fly   360 QMAQKGKFGSKGALHSPVGSAHSFDLQSKKPHAKTAPRRHVANWRMERLEVDSKSNSDEEFFDCL 424

  Fly   334 NTSSSNDEQLSAPLVTARTGDDSPLSEIPH-TPTS--------NPRLDLDIHFFSDTEITTPVGG 389
            :|:.:|.....:.|.....|||||   .|| .|:|        |.|.: |..|..|..:......
  Fly   425 DTNETNSLAKWSSLELLGEGDDSP---PPHGGPSSAASVGGRGNSRQE-DSIFNQDFLMRVASER 485

  Fly   390 GGAGSGRAAG-----------GRPSTP----------------IQSDSEL--------------E 413
            |.....|::.           |.||||                :.:.|||              |
  Fly   486 GNKRQLRSSASVDRSHDSSPPGSPSTPSCPTTILILVVHAGSVLDAASELTAKKSDVTTFRGSFE 550

  Fly   414 TTMRDN-----RHVVTE---------------ESTASWKW-----------------GELP---- 437
            ..||.:     .||..:               .|.:.:.:                 |.:|    
  Fly   551 AVMRQHYPSLLTHVTIKMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIADVPIGAIPLLSV 615

  Fly   438 -TPE--QAKNEAMSAAQVQQSEHQSMLSNMFSFMKRANRLRKEKGVGEVGDIYLSDLDAGSMDPE 499
             :||  :..|:.::||.:...|.                |:.|:|.|..|.|.:.....||:   
  Fly   616 ASPEFHETVNKTVAAANIVYHEF----------------LKSEEGHGFSGQIVMLGDSMGSL--- 661

  Fly   500 MAALYFPSPLSKAASPPEEDGESGNG--------TSLPHSP--SSLEEGQKSIDSDFD------- 547
              ..|.....|..:.|....|.|.:|        |..|.||  |.|::.::.|::|.|       
  Fly   662 --LAYEALCRSNGSQPGTASGASNSGGDAATNINTHNPLSPRNSRLDDDERFIEADLDAKRLLVA 724

  Fly   548 -ETKQQRDNNRYLDFVAMSMCGMSEQGAPPSDEEFDRHLVNYPDVCKSPSIFSSPNLVVRLNGKY 611
             ..:::|.::            .|:..|...|.|          ||.. .:|.||..||....|.
  Fly   725 PSPRRRRSSS------------SSDSRATKLDFE----------VCDF-FMFGSPLSVVLAARKL 766

  Fly   612 YTWMAACPIVMTMITFQKPLTHDA-------------IEQLMSQTV------------------- 644
            :...||.|         :|..|..             :|.|:|...                   
  Fly   767 HDAKAALP---------RPNCHQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYPLGNG 822

  Fly   645 -----------------DG-KCLPGDEKQEAVAQADNGG-------------QTKRYWWSWRRSQ 678
                             || ..|.|....:|..|:...|             |.|  ||..:|..
  Fly   823 QPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQSTISGLIENVSLSTIHALQNK--WWGTKRLD 885

  Fly   679 DA--APNHLNN--THGMP--------------------LGK----------DEKDGDQAAVATQT 709
            .|  .|..|:|  .|.:|                    :||          |:||.    .:...
  Fly   886 YALYCPEGLSNFPAHALPHLFHASYWESPDVIAFILRQIGKFEGIPFVGSNDDKDN----ASFHP 946

  Fly   710 SRPTSPDITDPTLSK----------SDSLVNAE-----NTSALVDNLEELTMASNKSD-----EP 754
            .:|....|...|..|          :|.:|...     |...:...|:.:|:...|.|     :|
  Fly   947 GQPREKWIKKRTSVKLKNVAANHRANDVIVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDP 1011

  Fly   755 ---------KERYKKSLRLSSAAIKKLNLKEGMNEIEFSVTTAYQGTTRCKCYLFRWKHNDKVVI 810
                     .|...|:.|:|.:...:::|..|:..::..|...:   |...||:.......:.|:
  Fly  1012 PAGEWTFLSTEVTDKNGRISYSIPDQVSLGYGIYPVKMVVRGDH---TSVDCYMAVVPPLTECVV 1073

  Fly   811 SDIDGTITKSDVLGHILPMVGKD-WAQLGVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYL--R 872
            ..|||:.|.|      :.:.|:| ..:.|...:....::.||.|:|::.|...|.:....:|  .
  Fly  1074 FSIDGSFTAS------MSVTGRDPKVRAGAVDVCRHWQELGYLLIYITGRPDMQQQRVVSWLSQH 1132

  Fly   873 SIRQGNVMLPDGPLLLNPTSLISAFHREVIEKKPEQFKIACLSDIRDLFPDKEPFYAGYGNRIND 937
            :...|.:...|| |..:|....:|:...:::.......                  |.||:. .|
  Fly  1133 NFPHGLISFADG-LSTDPLGHKTAYLNNLVQNHGISIT------------------AAYGSS-KD 1177

  Fly   938 VWAYRAVGIPIMRIFTINTKGELKHELTQTFQSSGY 973
            :..|..||:...:||.:...|: |.:...|..|.||
  Fly  1178 ISVYTNVGMRTDQIFIVGKVGK-KLQSNATVLSDGY 1212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpinNP_001188884.1 Lipin_N 1..103 CDD:282436 17/79 (22%)
Lipin_mid 562..671 CDD:293481 29/171 (17%)
LNS2 760..985 CDD:285447 46/217 (21%)
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898 43/221 (19%)
DDHD 746..924 CDD:280937 35/199 (18%)
LNS2 1072..1203 CDD:197870 33/157 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5083
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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