DRSC/TRiP Functional Genomics Resources

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Protein Alignment CXCR2 and SIFaR

DIOPT Version :9

Sequence 1:NP_001161770.1 Gene:CXCR2 / 3579 HGNCID:6027 Length:360 Species:Homo sapiens
Sequence 2:NP_001163674.1 Gene:SIFaR / 42530 FlyBaseID:FBgn0038880 Length:758 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CXCR2NP_001161770.1 7tmA_CXCR1_2 49..325 CDD:341333
TM helix 1 51..75 CDD:341333
TM helix 2 84..105 CDD:341333
TM helix 3 120..142 CDD:341333
TM helix 4 164..180 CDD:341333
TM helix 5 209..232 CDD:341333
TM helix 6 250..272 CDD:341333
TM helix 7 293..318 CDD:341333
SIFaRNP_001163674.1 7tm_4 216..>443 CDD:304433
7tm_1 225..495 CDD:278431
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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