DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and PUB1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_014382.1 Gene:PUB1 / 855716 SGDID:S000004961 Length:453 Species:Saccharomyces cerevisiae


Alignment Length:159 Identity:41/159 - (25%)
Similarity:69/159 - (43%) Gaps:26/159 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ESLEETNGEQETEIATEVEE----EGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQM--A 73
            |:.||.:.:|:.:....||.    |.....||..|...|    :|..:|:.:..|.|.|..:  |
Yeast     3 ENNEEQHQQQQQQQPVAVETPSAVEAPASADPSSEQSVA----VEGNSEQAEDNQGENDPSVVPA 63

  Fly    74 GGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG 138
            ...|.|           :|...|.:||||:|...:.:.|:.:|...|.|..:.|:.:| :.....
Yeast    64 NAITGG-----------RETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVN 116

  Fly   139 FAYIEFGSKEFVETALAMNETLFRGRQIK 167
            :|::|:........||   :|| .|:||:
Yeast   117 YAFVEYHQSHDANIAL---QTL-NGKQIE 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 14/56 (25%)
RRM_II_PABPN1 97..172 CDD:409966 20/71 (28%)
PUB1NP_014382.1 RRM1_PUB1 77..150 CDD:410026 20/70 (29%)
RRM2_PUB1 161..240 CDD:410031
RRM3_PUB1 341..414 CDD:410033
Blue background indicates that the domain is not in the aligned region.

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