DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and NOP13

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_014224.2 Gene:NOP13 / 855547 SGDID:S000005119 Length:403 Species:Saccharomyces cerevisiae


Alignment Length:208 Identity:46/208 - (22%)
Similarity:92/208 - (44%) Gaps:40/208 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NEDQLLESLEETNGEQETEIATEVEEEGSMQIDPE-----------LEAIKAR-------VKEME 55
            ||:|:.::|.:...:::.|...|::.:.|:.:..:           ||.:.|:       ::|.:
Yeast    17 NEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNAKYNIDPKSIEEYK 81

  Fly    56 EEAEKIKQMQSEVDKQ---MAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFH 117
            |:|||.|...||.|.|   ....:.||..:..:..::|::.:...|::||:.:..:.::|...|.
Yeast    82 EDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFI 146

  Fly   118 GCGTIN-----RVT-----------ILCNKADG-HPKGFAYIEFGSKEFVETALAMNETLFRGRQ 165
            .....|     |||           :....::. ..|||.|:.|.:.|.::..|.::|:...||.
Yeast   147 AKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRN 211

  Fly   166 --IKVMSKRTNRP 176
              ||.....:.||
Yeast   212 MLIKDSENYSGRP 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 17/76 (22%)
RRM_II_PABPN1 97..172 CDD:409966 21/93 (23%)
NOP13NP_014224.2 RRM1_Nop13p_fungi 127..217 CDD:409830 21/89 (24%)
RRM2_Nop13p_fungi 241..316 CDD:409831
Blue background indicates that the domain is not in the aligned region.

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