Protein Alignment Pabp2 and SGN1

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_012266.1
• Gene: SGN1 / 854817
• SGDID: S000001440
• Length: 250
• Species: Saccharomyces cerevisiae
• Alignment Length: 148
• Identity: 55/148 - (37%)
• Similarity: 84/148 - (56%)
• Gaps: 7/148 - (4%)

  Fly    38 MQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATV--PLSLEEKQ----EIDTR 96
            |..:.:::| ||.:|......:|..:.:.|:|:.:...|..|...|  .||.|||.    |.|:|
Yeast     1 MSQEEKVDA-KATLKTEISNNKKNDKQELELDELVGKLSIEGTPQVSQKLSKEEKHAHQLEADSR 64

  Fly    97 SVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLF 161
            |::|||:....:.|::|.||..||.|.|:|:|.::..|.|||:.||||.|..:.|.||.:|....
Yeast    65 SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGEL 129

  Fly   162 RGRQIKVMSKRTNRPGLS 179
            :|::|.|..||||.||.:
Yeast   130 KGKKIAVSRKRTNIPGFN 147

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	6/29 (21%)
		RRM_II_PABPN1	97..172	CDD:409966	30/74 (41%)
SGN1	NP_012266.1	PABP-1234	<52..>202	CDD:130689	42/96 (44%)
		RRM_II_PABPs	65..137	CDD:409747	29/71 (41%)