DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and NUC-L1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_175322.1 Gene:NUC-L1 / 841314 AraportID:AT1G48920 Length:557 Species:Arabidopsis thaliana


Alignment Length:190 Identity:45/190 - (23%)
Similarity:86/190 - (45%) Gaps:19/190 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMA 73
            :||...||.:|...:::.:  |:..::.|..     |:.::...|.|:|.|..|:..|:|:...|
plant   220 DEDSDEESEDEKPAQKKAD--TKASKKSSSD-----ESSESEEDESEDEEETPKKKSSDVEMVDA 277

  Fly    74 GGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG 138
            ..|:   |..|.:........:::::..|:.:.....::|..|...|.:..|....|:.||..:|
plant   278 EKSS---AKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRG 339

  Fly   139 FAYIEFGSKEFVETALAMNETLFRGRQIKV-----MSKRTNRPGLSTTNRFARGSFRGRG 193
            |.::||.|.|..:.||..:.....||:|::     ..:|..||..:..:    |:||..|
plant   340 FGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQS----GNFRSGG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 14/58 (24%)
RRM_II_PABPN1 97..172 CDD:409966 19/79 (24%)
NUC-L1NP_175322.1 RRM1_NUCLs 298..375 CDD:409884 19/76 (25%)
RRM2_NUCLs 402..479 CDD:409885
Blue background indicates that the domain is not in the aligned region.

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