DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and SR34

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_850933.1 Gene:SR34 / 839262 AraportID:AT1G02840 Length:303 Species:Arabidopsis thaliana


Alignment Length:122 Identity:34/122 - (27%)
Similarity:51/122 - (41%) Gaps:8/122 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 TRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNET 159
            :|:|||||:.......|:|..|...|.:.::.:   |....|.|:|::||......|.|:...:.
plant     6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67

  Fly   160 L-FRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYR 215
            . |.|.:::|......|.....|    ||||.|.|....|.......||..|...:|
plant    68 YDFDGHRLRVELAHGGRRSSDDT----RGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 20/75 (27%)
SR34NP_850933.1 RRM1_SF2_plant_like 8..79 CDD:410011 20/73 (27%)
RRM2_SF2_plant_like 119..194 CDD:410014 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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