DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pabp2 and AT1G17640

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_173208.1 Gene:AT1G17640 / 838341 AraportID:AT1G17640 Length:369 Species:Arabidopsis thaliana


Alignment Length:142 Identity:35/142 - (24%)
Similarity:57/142 - (40%) Gaps:35/142 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 EKIKQMQSEV---DKQMAGGST--TGLATVPLSLEEKQEIDTR----------SVYVGNVDYGAS 108
            |::.|...||   |.:..||:.  ||      .::.|..:|.|          .::||.|.:..:
plant    20 EQLPQSDFEVETFDDRRNGGAAVDTG------GIQMKHSVDHRHSSSSMSSPGKLFVGGVSWETT 78

  Fly   109 AEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALA-----------MNETLFR 162
            ||....:|...|.:....|:.::..|:|:||.::.|......|..|.           :..||.|
plant    79 AETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPR 143

  Fly   163 G---RQIKVMSK 171
            |   ..||.:||
plant   144 GDKDTDIKAVSK 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 2/8 (25%)
RRM_II_PABPN1 97..172 CDD:409966 23/89 (26%)
AT1G17640NP_173208.1 RRM_SF 68..138 CDD:473069 15/69 (22%)
RRM_SF 158..236 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.