Protein Alignment Pabp2 and AT5G65260

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_201329.1
• Gene: AT5G65260 / 836651
• AraportID: AT5G65260
• Length: 220
• Species: Arabidopsis thaliana
• Alignment Length: 221
• Identity: 86/221 - (38%)
• Similarity: 121/221 - (54%)
• Gaps: 45/221 - (20%)

  Fly    23 EQETEI-ATEVEEEGSMQID------------------PELEAIKARVKEMEEEAEKIKQMQSEV 68
            |:|.|: ..|:.:.|.|..|                  .||:.:|.|:||||:||..:::||::|
plant     3 EEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKV 67

  Fly    69 DKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKAD 133
            :|:|.....   |::..:...|:|:|.|||:||||||..:.||::.||..|||::|||||.:|.
plant    68 EKEMGAQDP---ASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF- 128

  Fly   134 GHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSR 198
            |.||||||:||...|.|:.||.:||:...|||:||:.||||.|||.        .|||
plant   129 GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLK--------QFRG------- 178

  Fly   199 ACCHSTFRGARRAMGYRGRANYYAPY 224
                   |.....||||.|..:.:||
plant   179 -------RRFNPYMGYRFRRPFMSPY 197

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	19/63 (30%)
		RRM_II_PABPN1	97..172	CDD:409966	41/74 (55%)
AT5G65260	NP_201329.1	PABP-1234	<61..>219	CDD:130689	69/163 (42%)
		RRM_II_PABPs	93..164	CDD:409747	40/71 (56%)