DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and AT5G19350

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_197436.1 Gene:AT5G19350 / 832055 AraportID:AT5G19350 Length:425 Species:Arabidopsis thaliana


Alignment Length:124 Identity:37/124 - (29%)
Similarity:54/124 - (43%) Gaps:19/124 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKE 148
            |.:|||     .|::::|::.|......|.:.|...|.:..|.::.||..|.|:|:.:|||.|..
plant    17 PQTLEE-----VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76

  Fly   149 FVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRG 207
            ..|..|    ..:.|.|:         ||...|.|....|| |.|.:|.....||.|.|
plant    77 AAERTL----QTYNGTQM---------PGTELTFRLNWASF-GSGQKVDAGPDHSIFVG 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 19/74 (26%)
AT5G19350NP_197436.1 RRM1_SECp43_like 25..105 CDD:409780 25/93 (27%)
RRM2_SECp43_like 115..194 CDD:409781 4/7 (57%)
RRM_SF 237..306 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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