Sequence 1: | NP_476902.1 | Gene: | Pabp2 / 35788 | FlyBaseID: | FBgn0005648 | Length: | 224 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_196597.1 | Gene: | AT5G10350 / 830899 | AraportID: | AT5G10350 | Length: | 217 | Species: | Arabidopsis thaliana |
Alignment Length: | 217 | Identity: | 90/217 - (41%) |
---|---|---|---|
Similarity: | 124/217 - (57%) | Gaps: | 40/217 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 23 EQETEI-ATEVEEEGSMQI-DP-------------ELEAIKARVKEMEEEAEKIKQMQSEVDKQM 72
Fly 73 AGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPK 137
Fly 138 GFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCH 202
Fly 203 STFRGARRAMGYRGRANYYAPY 224 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Pabp2 | NP_476902.1 | RRM | <43..>172 | CDD:223796 | 67/128 (52%) |
RRM_II_PABPN1 | 97..172 | CDD:240994 | 43/74 (58%) | ||
AT5G10350 | NP_196597.1 | PIN_SF | <6..70 | CDD:421694 | 23/65 (35%) |
RRM | <47..>212 | CDD:223796 | 78/173 (45%) | ||
RRM_II_PABPs | 90..161 | CDD:409747 | 42/71 (59%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 86 | 1.000 | Domainoid score | I2786 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4209 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H3412 | |
Inparanoid | 1 | 1.050 | 150 | 1.000 | Inparanoid score | I1715 |
OMA | 1 | 1.010 | - | - | QHG53866 | |
OrthoDB | 1 | 1.010 | - | - | D1412946at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001228 | |
OrthoInspector | 1 | 1.000 | - | - | otm2915 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101686 | |
Panther | 1 | 1.100 | - | - | O | PTHR23236 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X689 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.840 |