Protein Alignment Pabp2 and AT5G09880

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_568220.1
• Gene: AT5G09880 / 830848
• AraportID: AT5G09880
• Length: 527
• Species: Arabidopsis thaliana
• Alignment Length: 237
• Identity: 53/237 - (22%)
• Similarity: 82/237 - (34%)
• Gaps: 77/237 - (32%)

  Fly     2 ADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSM---------QIDPE------------LE 45
            :|.|...:.::.......::..:..|...||.|.||.         :.|||            |:
plant   114 SDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQMPLK 178

  Fly    46 AIKARVKEMEEEAEKIKQMQ--------------------------------------------S 66
            |.:..|.|...:|.|::.::                                            |
plant   179 ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPS 243

  Fly    67 EVDKQMA-GGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCN 130
            |.:|.:| ..|||...|.|..         |.:||||:.:..|..:|...|...|.:..|.:..:
plant   244 EAEKNLAQSNSTTVGGTGPAD---------RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLD 299

  Fly   131 KADGHPKGFAYIEFGSKEFVETA-LAMNETL-FRGRQIKVMS 170
            ...|..|||.:|:|...|..:.| :|:|..| ..||.|||.|
plant   300 PETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSS 341

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	18/129 (14%)
		RRM_II_PABPN1	97..172	CDD:409966	26/76 (34%)
AT5G09880	NP_568220.1	SF-CC1	85..517	CDD:273721	53/237 (22%)