Protein Alignment Pabp2 and AT4G14300

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_193166.2
• Gene: AT4G14300 / 827071
• AraportID: AT4G14300
• Length: 411
• Species: Arabidopsis thaliana
• Alignment Length: 225
• Identity: 52/225 - (23%)
• Similarity: 89/225 - (39%)
• Gaps: 37/225 - (16%)

  Fly     9 NEDQLLESLEETN-GEQETEIATEVEEEGSMQ-------IDPE-LEAIKARVKEMEEEAEKIKQM 64
            :||:|.|..  || ||....|....:..|..:       .||. |:.:......::.....:|:.
plant    18 DEDKLREHF--TNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRA 80

  Fly    65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILC 129
            .|..::|::|  .||......|........|:.::||.:....:.||...:|...|.:..|.|:.
plant    81 MSREEQQVSG--RTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMY 143

  Fly   130 NKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKV---MSKRTNRPGLSTTNRFARGSFRG 191
            ::|...|:||.::.|.|::.|::.|........|:|::|   :.|..| ||         |..|.
plant   144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDAN-PG---------GGGRS 198

  Fly   192 RGARVSRACCHSTFRGARRAMGYRGRANYY 221
            .|.           .|:....||.|..:.|
plant   199 MGG-----------GGSGGYQGYGGNESSY 217

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	15/67 (22%)
		RRM_II_PABPN1	97..172	CDD:409966	19/77 (25%)
AT4G14300	NP_193166.2	RRM1_hnRNPA_hnRNPD_like	8..78	CDD:409763	13/61 (21%)
		RRM2_Hrp1p	111..188	CDD:409767	19/76 (25%)