DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and PHIP1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_191094.1 Gene:PHIP1 / 824700 AraportID:AT3G55340 Length:597 Species:Arabidopsis thaliana


Alignment Length:200 Identity:44/200 - (22%)
Similarity:97/200 - (48%) Gaps:20/200 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EDITLNEDQLLESLEETNG----EQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQM 64
            |.....:|::.|: |..||    :.:|:|..:.:.:.::::| |||..:...:|.:.:.:|.|:.
plant    57 ETFAREDDEIREN-EVGNGGSSEKTDTKIKKKRKRDDAVEVD-ELEGDEGTKEEQKPQKKKNKKK 119

  Fly    65 Q-----SEVDKQMAGGST---TGLATVPLSLEEKQE--IDTRSVYVGNVDYGASAEELEAHFHGC 119
            :     ::..|:...|:.   ..:..:.::.:.|:|  :....:|||.:.|.::.:|:.::|..|
plant   120 KKKRKVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSC 184

  Fly   120 GTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMS-KRTNRPGL---ST 180
            |.|.:|.......||...|.|:|.|.:::..:.|||.:......|.:.:.. .:|..|.:   .|
plant   185 GVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKT 249

  Fly   181 TNRFA 185
            ::.||
plant   250 SSGFA 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 15/72 (21%)
RRM_II_PABPN1 97..172 CDD:409966 20/75 (27%)
PHIP1NP_191094.1 RRM1_PHIP1 163..234 CDD:409714 20/70 (29%)
RRM2_PHIP1 263..334 CDD:409715
PTZ00368 393..592 CDD:173561
Blue background indicates that the domain is not in the aligned region.

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