DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and CP33

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_190806.1 Gene:CP33 / 824403 AraportID:AT3G52380 Length:329 Species:Arabidopsis thaliana


Alignment Length:177 Identity:49/177 - (27%)
Similarity:72/177 - (40%) Gaps:49/177 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQS 66
            |:.:.:..:|::..|:||..         ||||||.               |.|||.|:.||   
plant    70 AETEASSADDEIQASVEEEE---------EVEEEGD---------------EGEEEVEEEKQ--- 107

  Fly    67 EVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNK 131
                           |...|.||.:      :||||:.|..::.||...|...||:..|.|:.:|
plant   108 ---------------TTQASGEEGR------LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDK 151

  Fly   132 ADGHPKGFAYIEFGSKEFVETALAM-NETLFRGRQIKVMSKRTNRPG 177
            .....:||.::..||.|..:.|:.| |.:...||.:||......|.|
plant   152 VTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGG 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 17/64 (27%)
RRM_II_PABPN1 97..172 CDD:409966 25/75 (33%)
CP33NP_190806.1 RRM_SF 117..196 CDD:473069 25/84 (30%)
RRM2_NsCP33_like 220..295 CDD:410187
Blue background indicates that the domain is not in the aligned region.

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