DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and NUC-L2

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_188491.1 Gene:NUC-L2 / 821392 AraportID:AT3G18610 Length:636 Species:Arabidopsis thaliana


Alignment Length:188 Identity:49/188 - (26%)
Similarity:86/188 - (45%) Gaps:5/188 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQS 66
            |.:|.:.:|:...|  ||::.|:......:|..:.|.|.....|:.....|| |.:.||:...:.
plant   293 AAKDSSSSEEDSDE--EESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKE-ESKDEKVTPKKK 354

  Fly    67 EVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNK 131
            :.|.:|........|..|.:...:.:..:::::.||:.|..:..::|..|...|.:..|. |.:.
plant   355 DSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVR-LSSF 418

  Fly   132 ADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKV-MSKRTNRPGLSTTNRFARGS 188
            .||..||:.:|||.|.|..:.||.||..|..||.::: ::.....|..|...|...||
plant   419 DDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGS 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 15/64 (23%)
RRM_II_PABPN1 97..172 CDD:409966 24/75 (32%)
NUC-L2NP_188491.1 RRM1_NUCLs 385..461 CDD:409884 24/76 (32%)
RRM2_NUCLs 480..556 CDD:409885
Blue background indicates that the domain is not in the aligned region.

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