Protein Alignment Pabp2 and AT3G15010

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_188119.1
• Gene: AT3G15010 / 820730
• AraportID: AT3G15010
• Length: 404
• Species: Arabidopsis thaliana
• Alignment Length: 247
• Identity: 57/247 - (23%)
• Similarity: 90/247 - (36%)
• Gaps: 49/247 - (19%)

  Fly     2 ADEDITLNE-----------DQLLESLEETNGEQETEIATEVEEEGS---------MQIDPELEA 46
            ||.||:..:           .:.|.||..:.|:.|..|....:..|.         |.:|..|.|
plant    68 ADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLA 132

  Fly    47 IKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEE 111
            :|       |.::||....:......:|...||        .:..:|..|.:||.||.:...|:.
plant   133 LK-------EPSKKIDGRVTVTQLAASGNQGTG--------SQIADISMRKIYVANVPFDMPADR 182

  Fly   112 LEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGR----QIKVMSKR 172
            |..||...|.:....:..:|..|..:|||...:.:.|..:.|||....:..|:    ::.|..|:
plant   183 LLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKK 247

  Fly   173 TNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224
            ..:||:..    |:....|.|.      .|....|..|..|..|.|...:.|
plant   248 GGKPGMPQ----AQDGGSGHGH------VHGEGMGMVRPAGPYGAAGGISAY 289

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	18/84 (21%)
		RRM_II_PABPN1	97..172	CDD:409966	20/78 (26%)
AT3G15010	NP_188119.1	RRM_SF	75..150	CDD:473069	15/81 (19%)
		RRM2_NsCP33_like	168..242	CDD:410187	19/73 (26%)