Protein Alignment Pabp2 and U11/U12-31K

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_187651.1
• Gene: U11/U12-31K / 820203
• AraportID: AT3G10400
• Length: 261
• Species: Arabidopsis thaliana
• Alignment Length: 162
• Identity: 35/162 - (21%)
• Similarity: 66/162 - (40%)
• Gaps: 26/162 - (16%)

  Fly    63 QMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTI 127
            |..|.......||.:.|||.           ...::||.|:|:..:..::...|...|.:.|||:
plant    35 QPSSSAKSSAPGGGSGGLAP-----------SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTV 88

  Fly   128 LCNKADGHPKGFAYIEFGSKE-FVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRG 191
            |.::.....:|.|::.:.|:| ..:.|.:|:..:..||::.|        .::..|..|....:.
plant    89 LKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTV--------SIAADNGRASEFIKK 145

  Fly   192 RGARVSRAC--C----HSTFRGARRAMGYRGR 217
            |..:....|  |    |.::...:..:|.|.|
plant   146 RVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	2/4 (50%)
		RRM_II_PABPN1	97..172	CDD:409966	19/75 (25%)
U11/U12-31K	NP_187651.1	RRM_ZCRB1	56..131	CDD:409827	19/82 (23%)
		PTZ00368	154..>173	CDD:173561	3/18 (17%)