Protein Alignment Pabp2 and AT3G07810

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_850539.1
• Gene: AT3G07810 / 819972
• AraportID: AT3G07810
• Length: 495
• Species: Arabidopsis thaliana
• Alignment Length: 257
• Identity: 51/257 - (19%)
• Similarity: 81/257 - (31%)
• Gaps: 83/257 - (32%)

  Fly    36 GSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGL--------ATVPLSLEEKQE 92
            |.:..|...|.:|.......|..|.:      :.|....|...|.        |...:.:.||..
plant    11 GGISWDTNEERLKEYFSSFGEVIEAV------ILKDRTTGRARGFGFVVFADPAVAEIVITEKHN 69

  Fly    93 ID-----------------------------------TRSVYVGNVDYGASAEELEAHFHGCGTI 122
            ||                                   ||.::||.:....:..:.:.:|...||.
plant    70 IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTT 134

  Fly   123 NRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRT----NRPGLSTT-- 181
            ..|.::.:.....|:||.:|.:.|:|.||..|........|:.::|  ||.    ..||.|.:
plant   135 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV--KRAVPKELSPGPSRSPL 197

  Fly   182 ---------------NRFARG----SFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224
                           |.:|:|    :..|.|.|:..       |.:....|..|.|||.:.|
plant   198 GAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDG-------RFSPVGAGRSGFANYSSGY 252

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	6/31 (19%)
		RRM_II_PABPN1	97..172	CDD:409966	17/74 (23%)
AT3G07810	NP_850539.1	RRM_SF	8..78	CDD:473069	14/72 (19%)
		RRM2_Hrp1p	109..186	CDD:409767	19/78 (24%)