DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and SLIRP

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_112487.1 Gene:SLIRP / 81892 HGNCID:20495 Length:109 Species:Homo sapiens


Alignment Length:111 Identity:27/111 - (24%)
Similarity:53/111 - (47%) Gaps:9/111 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 MAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHP 136
            ||..:..|.|.:      ::.|:....:|..:.:.|::.:|:.||...|.:.|..:..:|..|..
Human     1 MAASAARGAAAL------RRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFH 59

  Fly   137 KGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTN 182
            :|..:::|.|:|.:..||.....:..|.:::|   .|.||.|..|:
Human    60 RGLGWVQFSSEEGLRNALQQENHIIDGVKVQV---HTRRPKLPQTS 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 17/74 (23%)
SLIRPNP_112487.1 RRM_SLIRP 20..92 CDD:409688 17/74 (23%)
Blue background indicates that the domain is not in the aligned region.

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