Protein Alignment Pabp2 and pabpn1l

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: XP_021333291.1
• Gene: pabpn1l / 796580
• ZFINID: ZDB-GENE-080709-5
• Length: 166
• Species: Danio rerio
• Alignment Length: 147
• Identity: 81/147 - (55%)
• Similarity: 102/147 - (69%)
• Gaps: 5/147 - (3%)

  Fly    64 MQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTIL 128
            ||.||::|........| ...::.||:.:.|.||:|||||||||:|:|||.:|:.||.:|||||.
Zfish     6 MQYEVERQFPYSPEAEL-FFDMTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIP 69

  Fly   129 CNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSF-RGR 192
            .|:..|||||||||||..:|.|.||:|::|||||||.|||..||||.||.|||:.:.||.: |||
Zfish    70 YNRFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTTDVYLRGGWSRGR 134

  Fly   193 GARVSRACCHSTFRGAR 209
            |.|.||   .:.|||.|
Zfish   135 GVRASR---FNPFRGCR 148

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	2/3 (67%)
		RRM_II_PABPN1	97..172	CDD:409966	49/74 (66%)
pabpn1l	XP_021333291.1	RRM_SF	38..113	CDD:473069	49/74 (66%)