DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and BOLL

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_047301536.1 Gene:BOLL / 66037 HGNCID:14273 Length:345 Species:Homo sapiens


Alignment Length:117 Identity:25/117 - (21%)
Similarity:54/117 - (46%) Gaps:6/117 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 EAEKIKQMQSEVDKQMAGGSTTGLATVPL----SLEEKQEIDTRSVYVGNVDYGASAEELEAHFH 117
            |.|...|..:::.......|...::.|||    |......:....::||.:|:..:..:|...|.
Human     2 ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFS 66

  Fly   118 GCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETL-FRGRQIKV 168
            ..|::..|.|:.::| |..||:.::.|.::|..:..|...|.| ::.:::.:
Human    67 QYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNI 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 3/10 (30%)
RRM_II_PABPN1 97..172 CDD:409966 17/73 (23%)
BOLLXP_047301536.1 RRM_BOULE 43..123 CDD:410074 17/76 (22%)
PRK10263 <124..>309 CDD:236669
Blue background indicates that the domain is not in the aligned region.

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