DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and dazap1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_021335308.1 Gene:dazap1 / 561459 ZFINID:ZDB-GENE-070212-1 Length:469 Species:Danio rerio


Alignment Length:110 Identity:24/110 - (21%)
Similarity:52/110 - (47%) Gaps:11/110 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 TRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNET 159
            ::.::||.:.:.....||..:|:..|.:..|.::.:.....|:||.:|.|.:::.|:.|:.|:..
Zfish   124 SKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFH 188

  Fly   160 LFRGRQIKV-----MSKRTNRPGLSTTNRFARGSFRGRGARVSRA 199
            ...|::::|     ...:...||....|::      |..|.:|.|
Zfish   189 DIMGKKVEVKKAEPRDSKAPAPGQLGANQW------GPRAIISAA 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 17/79 (22%)
dazap1XP_021335308.1 RRM1_DAZAP1 24..105 CDD:409988
RRM2_DAZAP1 127..202 CDD:409765 17/74 (23%)
PRK10263 <220..>430 CDD:236669 3/8 (38%)
Blue background indicates that the domain is not in the aligned region.

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