DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and RBM23

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001339693.1 Gene:RBM23 / 55147 HGNCID:20155 Length:483 Species:Homo sapiens


Alignment Length:119 Identity:26/119 - (21%)
Similarity:48/119 - (40%) Gaps:21/119 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAH 115
            |:..:.|..::..|.:.:.|...|         |:.|           |||::.:..:.:.|...
Human   282 VQASQAEKNRLAAMANNLQKGNGG---------PMRL-----------YVGSLHFNITEDMLRGI 326

  Fly   116 FHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETAL-AMNETLFRGRQIKV 168
            |...|.|:.:.::.:...|..||:.:|.|...|....|| .:|.....||.::|
Human   327 FEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 3/16 (19%)
RRM_II_PABPN1 97..172 CDD:409966 19/73 (26%)
RBM23NP_001339693.1 SF-CC1 143..482 CDD:273721 26/119 (22%)

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