| Sequence 1: | NP_476902.1 | Gene: | Pabp2 / 35788 | FlyBaseID: | FBgn0005648 | Length: | 224 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_062275.1 | Gene: | Pabpn1 / 54196 | MGIID: | 1859158 | Length: | 302 | Species: | Mus musculus |
| Alignment Length: | 218 | Identity: | 129/218 - (59%) |
|---|---|---|---|
| Similarity: | 156/218 - (71%) | Gaps: | 20/218 - (9%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 22 GEQETEIATEVEEEGSMQI--------DPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTT 78
Fly 79 GLA-TVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
Fly 143 EFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR-FARGSFRGRGARV--SRACCHST 204
Fly 205 FRGARRAMGYRGRA---NYYAPY 224 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Pabp2 | NP_476902.1 | RRM | <43..>172 | CDD:223796 | 92/129 (71%) |
| RRM_II_PABPN1 | 97..172 | CDD:240994 | 57/74 (77%) | ||
| Pabpn1 | NP_062275.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..111 | 7/25 (28%) | |
| Interaction with SKIP. /evidence=ECO:0000250 | 2..141 | 30/55 (55%) | |||
| RRM | 109..>285 | CDD:223796 | 113/175 (65%) | ||
| Stimulates PAPOLA. /evidence=ECO:0000250 | 115..143 | 21/27 (78%) | |||
| RRM_II_PABPN1 | 169..244 | CDD:240994 | 57/74 (77%) | ||
| Strong poly(A) affinity and self-association. /evidence=ECO:0000250 | 255..302 | 16/46 (35%) | |||
| Interaction with PAPOLA. /evidence=ECO:0000250 | 282..302 | 7/19 (37%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C167840080 | |
| Domainoid | 1 | 1.000 | 123 | 1.000 | Domainoid score | I5599 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG4209 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H3412 | |
| Inparanoid | 1 | 1.050 | 231 | 1.000 | Inparanoid score | I3433 |
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D1412946at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0001228 | |
| OrthoInspector | 1 | 1.000 | - | - | oto95364 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_101686 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR23236 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4120 |
| SonicParanoid | 1 | 1.000 | - | - | X689 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 15 | 14.790 | |||||