Protein Alignment Pabp2 and rbm39b

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001014392.1
• Gene: rbm39b / 541556
• ZFINID: ZDB-GENE-050327-97
• Length: 539
• Species: Danio rerio
• Alignment Length: 192
• Identity: 43/192 - (22%)
• Similarity: 76/192 - (39%)
• Gaps: 51/192 - (26%)

  Fly    51 VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAH 115
            |:..:.|..:...|.|.:.:..||         |:.|           |||::.:..:.:.|...
Zfish   239 VQASQAEKNRAAAMASMLQRGGAG---------PMRL-----------YVGSLHFNITEDMLRGI 283

  Fly   116 FHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETAL-AMNETLFRGRQIKV--MSKRTN--- 174
            |...|.|..:.::.:...|..||:.:|.|...|..:.|| .:|.....||.:||  :::|::
Zfish   284 FEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASS 348

  Fly   175 -----------RPG--LSTTNR---FARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANY 220
                       |.|  |.||.|   .||.: .|.|.::..|        |::|:...|..::
Zfish   349 ASSFLDNDELERTGIDLGTTGRLQLMARLA-EGTGLQIPAA--------AKQALQMSGSVSF 401

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	4/16 (25%)
		RRM_II_PABPN1	97..172	CDD:409966	20/77 (26%)
rbm39b	NP_001014392.1	SF-CC1	76..526	CDD:273721	43/192 (22%)