DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and srsf7

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001007487.1 Gene:srsf7 / 493215 XenbaseID:XB-GENE-920026 Length:234 Species:Xenopus tropicalis


Alignment Length:158 Identity:48/158 - (30%)
Similarity:61/158 - (38%) Gaps:50/158 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
            |||||:..||...|||..|...|.:..|.|..|     |.|||::||......|.|:       |
 Frog    13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDTRDAEDAV-------R 65

  Fly   163 GRQIKVMSKRTNRPGLST----TNRF----ARGSF-----------------------RGRGARV 196
            |...||:.....|..|||    .:|:    ||..|                       |.|.:| 
 Frog    66 GLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPSDRCYECGEKGHYAYDCQRYSRRRRSR- 129

  Fly   197 SRACCHSTFRGAR------RAMGYRGRA 218
            :|:..||..||.|      |:.|.|.|:
 Frog   130 TRSRSHSRSRGRRYTRSRSRSRGRRSRS 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 27/73 (37%)
srsf7NP_001007487.1 RRM_SF 12..88 CDD:473069 31/86 (36%)
zf-CCHC 104..119 CDD:395050 0/14 (0%)
Blue background indicates that the domain is not in the aligned region.

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