DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and Hrb87F

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster


Alignment Length:146 Identity:36/146 - (24%)
Similarity:59/146 - (40%) Gaps:22/146 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 GLATVPLSLEEKQEIDT-------RSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHP 136
            |....|.....:||||:       :.::||.:......|.|..:|...|.|..|.|:.:|..|..
  Fly    91 GRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKK 155

  Fly   137 KGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACC 201
            :|||:|||...:.|:..:.......:.:.:.|      :..::..:...:|...|||.  .||  
  Fly   156 RGFAFIEFDDYDPVDKIILQKTHSIKNKTLDV------KKAIAKQDMDRQGGGGGRGG--PRA-- 210

  Fly   202 HSTFRGARRAMGYRGR 217
                 |.|...|.||:
  Fly   211 -----GGRGGQGDRGQ 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 19/74 (26%)
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 2/10 (20%)
RRM_SF 116..188 CDD:473069 19/77 (25%)
Blue background indicates that the domain is not in the aligned region.

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