Protein Alignment Pabp2 and rbm34

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001004890.1
• Gene: rbm34 / 448232
• XenbaseID: XB-GENE-5895036
• Length: 412
• Species: Xenopus tropicalis
• Alignment Length: 236
• Identity: 55/236 - (23%)
• Similarity: 102/236 - (43%)
• Gaps: 35/236 - (14%)

  Fly    12 QLLESLEETNGEQET-EIATEVEEEGSM---------QIDPELEAIKARV--KEMEEEAEKIKQM 64
            |:|:||.:..|..|: ...:....|.::         ::.|:.:.|.|.:  |:....::.:|:.
 Frog   182 QMLKSLFKEFGHIESMRFRSVARAEANLSRKVAAIQRKVHPKRKNINAYIVFKDESSASQALKRN 246

  Fly    65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILC 129
            .:||      ||...: .|.::.:.....:.||.::||:.|....|.:..||..||.:..|.|:.
 Frog   247 GAEV------GSGFHI-RVDIASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIR 304

  Fly   130 NKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR---FAR----- 186
            ::..|..|||.|:.|.|.:.|:.||.:|.:...||:|:|....|......:||:   |.:
 Frog   305 DQKTGIGKGFGYVLFESADAVQLALKLNNSELSGRKIRVKRSLTAEAAQKSTNKSSDFKKKLDTL 369

  Fly   187 --------GSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
                    .||.|..|.|.:..........::.:|.:.:.|
 Frog   370 KQAKPLKGNSFVGETAEVGKVKNKGHKNKKKKTVGNKKKKN 410

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	12/67 (18%)
		RRM_II_PABPN1	97..172	CDD:409966	26/74 (35%)
rbm34	NP_001004890.1	RRM1_RBM34	168..259	CDD:409828	16/83 (19%)
		RRM2_RBM34	272..344	CDD:409829	25/71 (35%)