DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and srsf9

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001004795.1 Gene:srsf9 / 448015 XenbaseID:XB-GENE-491310 Length:225 Species:Xenopus tropicalis


Alignment Length:133 Identity:35/133 - (26%)
Similarity:56/133 - (42%) Gaps:32/133 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETAL-AMNETLF 161
            |.|..:....|.::|:.|....|.:      | .||.|..|...:||..||.:|.|| .:::|.|
 Frog   119 VIVSGLPPSGSWQDLKDHMREAGDV------C-YADVHKDGMGIVEFIRKEDMEYALRKLDDTKF 176

  Fly   162 RGRQ-----IKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYY 221
            |..:     |:|..:|      :|:...:|...|||.:...          :||:..|   |:.:
 Frog   177 RSHEGETSYIRVCPER------NTSYSRSRSRSRGRDSPYQ----------SRRSPRY---ASPF 222

  Fly   222 APY 224
            .||
 Frog   223 RPY 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 23/79 (29%)
srsf9NP_001004795.1 RRM_SF 17..90 CDD:473069
RRM2_SRSF9 110..191 CDD:410161 23/78 (29%)
Blue background indicates that the domain is not in the aligned region.

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