Protein Alignment Pabp2 and snrnp70

DIOPT Version :10

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001003875.1
• Gene: snrnp70 / 445398
• ZFINID: ZDB-GENE-040825-2
• Length: 495
• Species: Danio rerio
• Alignment Length: 215
• Identity: 47/215 - (21%)
• Similarity: 76/215 - (35%)
• Gaps: 37/215 - (17%)

  Fly    41 DPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDY 105
            ||.......|.:..||..|:.::.:.|..:.:..|...  ...|.:....|....::::|..::|
Zfish    50 DPRDAPPPTRAETREERLERKRREKMERRQVVVEGELK--LWDPHNDANAQGDAFKTLFVARINY 112

  Fly   106 GASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNE-----------T 159
            ..:..:|...|...|.|.|:.|:.||..|.|:|:|:||:..:..:.:|....:           .
Zfish   113 DTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177

  Fly   160 LFRGRQIKVMSKRTNRPGLSTTNRFA------------------------RGSFRGRGARVSRAC 200
            :.|||.:|....|....||..|.|..                        |...||.....||..
Zfish   178 VERGRTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSDRDRDRGERRERSRER 242

  Fly   201 CHSTFRGARRAMGYRGRANY 220
            .....||.||....|.|..:
Zfish   243 DRDKERGERRRSRSRERRRH 262

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	6/26 (23%)
		RRM_II_PABPN1	97..172	CDD:409966	21/85 (25%)
snrnp70	NP_001003875.1	U1snRNP70_N	3..94	CDD:432406	9/45 (20%)
		RRM_snRNP70	102..187	CDD:409682	21/84 (25%)