DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and eIF4H2

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_651820.1 Gene:eIF4H2 / 43645 FlyBaseID:FBgn0039797 Length:459 Species:Drosophila melanogaster


Alignment Length:150 Identity:33/150 - (22%)
Similarity:55/150 - (36%) Gaps:30/150 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 EEKQEIDTRS---VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
            :.::::.|..   .||||:..|....::...|... .:..|.::.::.....||:.|:||.:...
  Fly    52 DRQRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDF-EVKNVRLIKDRETDEFKGYGYVEFETLAQ 115

  Fly   150 VETALAMNETLFRGR----------QIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHST 204
            :::||..|     ||          :|.:...|...||..:          |.|........|..
  Fly   116 LKSALNCN-----GRIKLDNFSAPLRIDIADHRRQNPGAPS----------GVGGAPPAGVGHER 165

  Fly   205 FRGARRAMGYRGRANYYAPY 224
            ..|..|. |..|.||...||
  Fly   166 GGGVGRG-GSTGAANGNNPY 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 18/87 (21%)
eIF4H2NP_651820.1 RRM_SF 58..144 CDD:473069 19/91 (21%)
Blue background indicates that the domain is not in the aligned region.

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