DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and RnpS1

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster


Alignment Length:164 Identity:36/164 - (21%)
Similarity:60/164 - (36%) Gaps:39/164 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 TVPLSLEEKQEIDTRS-------VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHP--- 136
            |.|....|:....|||       ::||.:....:.:.:...|...|.:..|....::.  ||   
  Fly   198 TPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRF--HPNFG 260

  Fly   137 KGFAYIEFGSKEFVETALA-MNETLFRGRQIKVM----------SKRTNRPGLSTTN-------R 183
            :|.|::|:.:.|..|:|:. |:.....|::|.|.          .:|.:.|.....|       :
  Fly   261 RGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRWRSPPQ 325

  Fly   184 FARGSFRGRGARVSRACCHSTFRGARRAMGYRGR 217
            |.|.:.||.|....         |.||....|.|
  Fly   326 FNRFNNRGGGGGGG---------GGRRQSPMRNR 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 18/95 (19%)
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 16/74 (22%)
Blue background indicates that the domain is not in the aligned region.

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