Protein Alignment Pabp2 and pabpn1

DIOPT Version :9

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_001001230.1
• Gene: pabpn1 / 407911
• XenbaseID: XB-GENE-1007049
• Length: 296
• Species: Xenopus tropicalis
• Alignment Length: 223
• Identity: 129/223 - (57%)
• Similarity: 158/223 - (70%)
• Gaps: 21/223 - (9%)

  Fly    10 EDQLLESLE--ETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQM 72
            ||:.||..|  |..|:|..|             |||||||||||:||||||||:|::|:||:|||
 Frog    87 EDEELEEEEPGELTGDQTIE-------------DPELEAIKARVREMEEEAEKLKELQNEVEKQM 138

  Fly    73 AGGSTTGLA-TVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHP 136
            ......|.| .|.:|:|||.|.|.||:|||||||||:||||||||||||::|||||||:|..|||
 Frog   139 NMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHP 203

  Fly   137 KGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR-FARGSFRGRGARV-SRA 199
            ||||||||..||.|.|:||::|:|||||||||:.|||||||:|||:| |.|..:|.|.:.. ||:
 Frog   204 KGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRS 268

  Fly   200 CCHSTFRGARRAMGYRGRA---NYYAPY 224
            ..:|.:....|...|||||   ::|.||
 Frog   269 RFYSGYTPRPRGRVYRGRARVTSWYTPY 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	91/129 (71%)
		RRM_II_PABPN1	97..172	CDD:240994	57/74 (77%)
pabpn1	NP_001001230.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..102		6/14 (43%)
		Necessary for homooligomerization. /evidence=ECO:0000250|UniProtKB:Q86U42	146..296		91/149 (61%)
		RRM_II_PABPN1	164..239	CDD:240994	57/74 (77%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	123	1.000	Domainoid score	I5526
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	230	1.000	Inparanoid score	I3366
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1412946at2759
OrthoFinder	1	1.000	-	-		FOG0001228
OrthoInspector	1	1.000	-	-		oto105540
Panther	1	1.100	-	-	LDO	PTHR23236
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4120
SonicParanoid	1	1.000	-	-		X689
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	10	10.100