DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and srsf2a

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_998547.1 Gene:srsf2a / 406691 ZFINID:ZDB-GENE-040426-2706 Length:225 Species:Danio rerio


Alignment Length:143 Identity:41/143 - (28%)
Similarity:62/143 - (43%) Gaps:19/143 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 SVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETAL-AMNETL 160
            |:.|.|:.|..|.|.|...|...|.:..|.|..::.....:|||::.|..|...|.|: ||:..|
Zfish    15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAL 79

  Fly   161 FRGRQIKVMSKRTNRPGLSTTNRFARGS----FRGRGARV------------SRACCHSTFRGAR 209
            ..||:::|...|..||..:..:|  ||:    :.|.|.|.            ||:...|..|...
Zfish    80 LDGRELRVQMARYGRPPDAHYSR--RGAPPRRYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRS 142

  Fly   210 RAMGYRGRANYYA 222
            |:...|.|:..|:
Zfish   143 RSRYSRSRSRSYS 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 24/75 (32%)
srsf2aNP_998547.1 RRM_SRSF2_SRSF8 16..88 CDD:409751 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.

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