DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pabp2 and hnrnpabb

DIOPT Version :10

Sequence 1:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_998467.1 Gene:hnrnpabb / 406594 ZFINID:ZDB-GENE-040426-2516 Length:309 Species:Danio rerio


Alignment Length:170 Identity:40/170 - (23%)
Similarity:60/170 - (35%) Gaps:59/170 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADEDITLNEDQLLESLEETNGEQET----EIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKI 61
            ||||       |.:|:.|  ||.:|.    |.|.|......:|||         ..:.||:|.| 
Zfish     1 MADE-------QFMETSE--NGNEENLNGGEAAGENGAGEGLQID---------ASKCEEDAGK- 46

  Fly    62 KQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVT 126
                                                ::||.:.:..|.::|:.:|...|.:...|
Zfish    47 ------------------------------------MFVGGLSWDTSKKDLKDYFSKFGEVMDCT 75

  Fly   127 ILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQI 166
            |..:...|..:||.:|.|...:.|:..|...|....||||
Zfish    76 IKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQI 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488 18/68 (26%)
RRM_II_PABPN1 97..172 CDD:409966 20/70 (29%)
hnrnpabbNP_998467.1 CBFNT 2..45 CDD:311868 17/60 (28%)
RRM1_hnRNPAB 41..120 CDD:410151 24/112 (21%)
RRM_SF 125..204 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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