Protein Alignment Pabp2 and pabpn1

DIOPT Version :9

• Sequence 1: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Sequence 2: NP_998424.1
• Gene: pabpn1 / 406543
• ZFINID: ZDB-GENE-040426-2401
• Length: 284
• Species: Danio rerio
• Alignment Length: 233
• Identity: 129/233 - (55%)
• Similarity: 158/233 - (67%)
• Gaps: 33/233 - (14%)

  Fly     1 MADEDITLNEDQLLES------LEETN-GEQETEIATEVEEEGSMQI-DPELEAIKARVKEMEEE 57
            ||:....|.|:.||:|      ||:.. |::|..:     :||...| |||||||||||:|||||
Zfish     1 MAEFGNGLAEESLLDSDPGHSELEDPGVGDEEPGL-----DEGEAAIEDPELEAIKARVREMEEE 60

  Fly    58 AEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTI 122
            |||:|::|:||:||| ..|......|.:|:|||.|.|.||:|||||||||:||||||||||||::
Zfish    61 AEKLKELQNEVEKQM-NLSPPPAGPVIMSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSV 124

  Fly   123 NRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNR-FAR 186
            |||||||:|..|||||||||||..||.|.||:|::|:|||||||||.:|||||||:|||:| |.|
Zfish   125 NRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPR 189

  Fly   187 GSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224
            ..||.||...|                  .||.||:.|
Zfish   190 ARFRSRGGNFS------------------SRARYYSGY 209

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	90/128 (70%)
		RRM_II_PABPN1	97..172	CDD:240994	57/74 (77%)
pabpn1	NP_998424.1	PLN03134	74..209	CDD:178680	90/153 (59%)
		RRM_II_PABPN1	99..174	CDD:240994	57/74 (77%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170584252
Domainoid	1	1.000	123	1.000	Domainoid score	I5565
eggNOG	1	0.900	-	-		E1_KOG4209
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	221	1.000	Inparanoid score	I3526
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1412946at2759
OrthoFinder	1	1.000	-	-		FOG0001228
OrthoInspector	1	1.000	-	-		oto40583
orthoMCL	1	0.900	-	-		OOG6_101686
Panther	1	1.100	-	-	LDO	PTHR23236
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4120
SonicParanoid	1	1.000	-	-		X689
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	14	13.790